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Long non-coding RNAs: definitions, functions, challenges and recommendations
Genes specifying long non-coding RNAs (lncRNAs) occupy a large fraction of the genomes
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …
Regulation of gene expression by cis-acting long non-coding RNAs
N Gil, I Ulitsky - Nature Reviews Genetics, 2020 - nature.com
Long non-coding RNAs (lncRNAs) are diverse transcription products emanating from
thousands of loci in mammalian genomes. Cis-acting lncRNAs, which constitute a …
thousands of loci in mammalian genomes. Cis-acting lncRNAs, which constitute a …
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
Abstract ChIP-Atlas (https://chip-atlas. org) is a web service providing both GUI-and API-
based data-mining tools to reveal the architecture of the transcription regulatory landscape …
based data-mining tools to reveal the architecture of the transcription regulatory landscape …
Long noncoding RNAs: molecular modalities to organismal functions
We have known for decades that long noncoding RNAs (lncRNAs) can play essential
functions across most forms of life. The maintenance of chromosome length requires an …
functions across most forms of life. The maintenance of chromosome length requires an …
From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo
Genome-wide sequencing has led to the discovery of thousands of long non-coding RNA
(lncRNA) loci in the human genome, but evidence of functional significance has remained …
(lncRNA) loci in the human genome, but evidence of functional significance has remained …
Enhancer–promoter interactions can form independently of genomic distance and be functional across TAD boundaries
Abstract Topologically Associating Domains (TADs) have been suggested to facilitate and
constrain enhancer–promoter interactions. However, the role of TAD boundaries in …
constrain enhancer–promoter interactions. However, the role of TAD boundaries in …
[LIBRO][B] RNA, the epicenter of genetic information
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
The Tug1 lncRNA locus is essential for male fertility
Abstract Background Several long noncoding RNAs (lncRNAs) have been shown to function
as components of molecular machines that play fundamental roles in biology. While the …
as components of molecular machines that play fundamental roles in biology. While the …
The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis
RNA has been classically known to play central roles in biology, including maintaining
telomeres, protein synthesis, and in sex chromosome compensation. While thousands of …
telomeres, protein synthesis, and in sex chromosome compensation. While thousands of …
[HTML][HTML] Cis and trans effects differentially contribute to the evolution of promoters and enhancers
Background Gene expression differences between species are driven by both cis and trans
effects. Whereas cis effects are caused by genetic variants located on the same DNA …
effects. Whereas cis effects are caused by genetic variants located on the same DNA …