Modeling and simulation of protein–surface interactions: achievements and challenges
Understanding protein–inorganic surface interactions is central to the rational design of new
tools in biomaterial sciences, nanobiotechnology and nanomedicine. Although a significant …
tools in biomaterial sciences, nanobiotechnology and nanomedicine. Although a significant …
Molecular simulation of adsorption and its implications to protein chromatography: A review
L Zhang, Y Sun - Biochemical Engineering Journal, 2010 - Elsevier
Adsorption on solid surface is of fundamental importance in the research and development
of chromatographic science and technology. Due to the limitation of the currently available …
of chromatographic science and technology. Due to the limitation of the currently available …
High-resolution atomic force microscopy and spectroscopy of native membrane proteins
CA Bippes, DJ Muller - Reports on Progress in Physics, 2011 - iopscience.iop.org
Membranes confining cells and cellular compartments are essential for life. Membrane
proteins are molecular machines that equip cell membranes with highly sophisticated …
proteins are molecular machines that equip cell membranes with highly sophisticated …
Structure prediction of protein− solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite
K Makrodimitris, DL Masica, ET Kim… - Journal of the American …, 2007 - ACS Publications
A molecular description of protein− surface interactions could open new avenues in
bionanotechnology and provide a deeper understanding of in vivo phase boundary …
bionanotechnology and provide a deeper understanding of in vivo phase boundary …
Parallel tempering Monte Carlo simulations of lysozyme orientation on charged surfaces
In this work, the parallel tempering Monte Carlo (PTMC) algorithm is applied to accurately
and efficiently identify the global-minimum-energy orientation of a protein adsorbed on a …
and efficiently identify the global-minimum-energy orientation of a protein adsorbed on a …
Effects of surface tethering on protein folding mechanisms
The folding mechanisms of proteins are increasingly being probed through single-molecule
experiments in which the protein is immobilized on a surface. Nevertheless, a clear …
experiments in which the protein is immobilized on a surface. Nevertheless, a clear …
[HTML][HTML] An entropic perspective of protein stability on surfaces
The interaction of proteins with surfaces regulates numerous processes in nature, science,
and technology. In many applications, it is desirable to place proteins on surfaces in an …
and technology. In many applications, it is desirable to place proteins on surfaces in an …
[HTML][HTML] Confinement effects on the thermodynamics of protein folding: Monte Carlo simulations
The effects of chaperonin-like cage-induced confinement on protein stability have been
studied for molecules of varying sizes and topologies. Minimalist models based on Gō-like …
studied for molecules of varying sizes and topologies. Minimalist models based on Gō-like …
[HTML][HTML] A coarse grain model for protein-surface interactions
The interaction of proteins with surfaces is important in numerous applications in many fields—
such as biotechnology, proteomics, sensors, and medicine—but fundamental understanding …
such as biotechnology, proteomics, sensors, and medicine—but fundamental understanding …
[HTML][HTML] Thermodynamics of DNA hybridization on surfaces
TJ Schmitt, TA Knotts - The Journal of chemical physics, 2011 - pubs.aip.org
Hybridization of single-stranded DNA (ssDNA) targets to surface-tethered ssDNA probes
was simulated using an advanced coarse-grain model to identify key factors that influence …
was simulated using an advanced coarse-grain model to identify key factors that influence …