Multivariate phylogenetic comparative methods: evaluations, comparisons, and recommendations

DC Adams, ML Collyer - Systematic biology, 2018 - academic.oup.com
Recent years have seen increased interest in phylogenetic comparative analyses of
multivariate data sets, but to date the varied proposed approaches have not been …

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models

L Tung Ho, C Ané - Systematic biology, 2014 - academic.oup.com
We developed a linear-time algorithm applicable to a large class of trait evolution models,
for efficient likelihood calculations and parameter inference on very large trees. Our …

A Generalized K Statistic for Estimating Phylogenetic Signal from Shape and Other High-Dimensional Multivariate Data

DC Adams - Systematic biology, 2014 - academic.oup.com
Phylogenetic signal is the tendency for closely related species to display similar trait values
due to their common ancestry. Several methods have been developed for quantifying …

mvmorph: an r package for fitting multivariate evolutionary models to morphometric data

J Clavel, G Escarguel… - Methods in Ecology and …, 2015 - Wiley Online Library
We present mvmorph, a package of multivariate phylogenetic comparative methods for the r
statistical environment. mvmorph is freely available on the cran package repository …

Size-correction and principal components for interspecific comparative studies

LJ Revell - Evolution, 2009 - academic.oup.com
Phylogenetic methods for the analysis of species data are widely used in evolutionary
studies. However, preliminary data transformations and data reduction procedures (such as …

Evolutionary covariation in geometric morphometric data: analyzing integration, modularity, and allometry in a phylogenetic context

CP Klingenberg, J Marugán-Lobón - Systematic biology, 2013 - academic.oup.com
Quantifying integration and modularity of evolutionary changes in morphometric traits is
crucial for understanding how organismal shapes evolve. For this purpose, comparative …

What does modularity mean?

ML Zelditch, A Goswami - Evolution & Development, 2021 - Wiley Online Library
Modularity is now generally recognized as a fundamental feature of organisms, one that may
have profound consequences for evolution. Modularity has recently become a major focus of …

Phylogenetic signal, evolutionary process, and rate

LJ Revell, LJ Harmon, DC Collar - Systematic biology, 2008 - academic.oup.com
A recent advance in the phylogenetic comparative analysis of continuous traits has been
explicit, model-based measurement of “phylogenetic signal” in data sets composed of …

[LIVRE][B] The comparative approach in evolutionary anthropology and biology

CL Nunn - 2011 - books.google.com
Comparison is fundamental to evolutionary anthropology. When scientists study
chimpanzee cognition, for example, they compare chimp performance on cognitive tasks to …

Comparative analysis of principal components can be misleading

JC Uyeda, DS Caetano, MW Pennell - Systematic Biology, 2015 - academic.oup.com
Most existing methods for modeling trait evolution are univariate, although researchers are
often interested in investigating evolutionary patterns and processes across multiple traits …