The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - journals.asm.org
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

Environmental factors sha** the ecological niches of ammonia-oxidizing archaea

TH Erguder, N Boon, L Wittebolle… - FEMS microbiology …, 2009 - academic.oup.com
For more than 100 years it was believed that bacteria were the only group responsible for
the oxidation of ammonia. However, recently, a new strain of archaea bearing a putative …

iTRAQ quantitative proteomic analysis reveals the pathways for methanation of propionate facilitated by magnetite

Y **g, J Wan, I Angelidaki, S Zhang, G Luo - Water research, 2017 - Elsevier
Methanation of propionate requires syntrophic interaction of propionate-oxidizing bacteria
and hydrogenotrophic methanogens, which is referred to as interspecies electron transfer …

Planctomycetes as host-associated bacteria: a perspective that holds promise for their future isolations, by mimicking their native environmental niches in clinical …

OD Kaboré, S Godreuil, M Drancourt - Frontiers in Cellular and …, 2020 - frontiersin.org
Traditionally recognized as environmental bacteria, Planctomycetes have just been linked
recently to human pathology as opportunistic pathogens, arousing a great interest for clinical …

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454 …

M Kröber, T Bekel, NN Diaz, A Goesmann… - Journal of …, 2009 - Elsevier
The phylogenetic structure of the microbial community residing in a fermentation sample
from a production-scale biogas plant fed with maize silage, green rye and liquid manure was …

Tracing the fate of microplastic carbon in the aquatic food web by compound-specific isotope analysis

SJ Taipale, E Peltomaa, JVK Kukkonen, MJ Kainz… - Scientific Reports, 2019 - nature.com
Increasing abundance of microplastics (MP) in marine and freshwaters is currently one of
the greatest environmental concerns. Since plastics are fairly resistant to chemical …

Sustained bauxite residue rehabilitation with gypsum and organic matter 16 years after initial treatment

AW Bray, DI Stewart, R Courtney, SP Rout… - Environmental …, 2018 - ACS Publications
Bauxite residue is a high volume byproduct of alumina manufacture which is commonly
disposed of in purpose-built bauxite residue disposal areas (BRDAs). Natural waters …

Candidatus Syntrophosphaera thermopropionivorans: a novel player in syntrophic propionate oxidation during anaerobic digestion

S Dyksma, C Gallert - Environmental microbiology reports, 2019 - Wiley Online Library
Propionate is an important intermediate in the anaerobic mineralization of organic matter. In
methanogenic environments, its degradation relies on syntrophic associations between …

Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae …

Y Fukunaga, M Kurahashi, Y Sakiyama… - The Journal of general …, 2009 - jstage.jst.go.jp
Three strains, FYK2301M01T, FYK2301M18 and FYK2301M52, all being Gram-negative,
spherical, motile and facultatively anaerobic, were isolated from a marine alga (Porphyra …

The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes

IR Vitorino, OM Lage - Antonie Van Leeuwenhoek, 2022 - Springer
The phylum Planctomycetes comprises bacteria with uncommon features among
prokaryotes, such as cell division by budding, absence of the bacterial tubulin-homolog cell …