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Hardware acceleration of genomics data analysis: challenges and opportunities
The significant decline in the cost of genome sequencing has dramatically changed the
typical bioinformatics pipeline for analysing sequencing data. Where traditionally, the …
typical bioinformatics pipeline for analysing sequencing data. Where traditionally, the …
AccuReD: High accuracy training of CNNs on ReRAM/GPU heterogeneous 3-D architecture
The growing popularity of convolutional neural networks (CNNs) along with their complexity
has led to the search for efficient computational platforms suitable for them. Resistive …
has led to the search for efficient computational platforms suitable for them. Resistive …
Beacon: Scalable near-data-processing accelerators for genome analysis near memory pool with the cxl support
Genome analysis benefits precise medical care, wildlife conservation, pandemic treatment
(eg, COVID-19), and so on. Unfortunately, in genome analysis, the speed of data processing …
(eg, COVID-19), and so on. Unfortunately, in genome analysis, the speed of data processing …
Machine learning-based Rowhammer mitigation
Rowhammer is a security vulnerability that arises due to the undesirable electrical
interaction between physically adjacent rows in DRAMs. Bit flips caused by Rowhammer …
interaction between physically adjacent rows in DRAMs. Bit flips caused by Rowhammer …
[หนังสือ][B] In-/near-memory Computing
This book provides a structured introduction of the key concepts and techniques that enable
in-/near-memory computing. For decades, processing-in-memory or near-memory …
in-/near-memory computing. For decades, processing-in-memory or near-memory …
Nest: Dimm based near-data-processing accelerator for k-mer counting
With the ability to help wildlife conservation, precise medical care, and disease
understanding, genomics analysis is becoming more and moe important. Recently, with the …
understanding, genomics analysis is becoming more and moe important. Recently, with the …
Abakus: Accelerating k-mer Counting with Storage Technology
This work seeks to leverage Processing-with-storage-technology (PWST) to accelerate a key
bioinformatics kernel called k-mer counting, which involves processing large files of …
bioinformatics kernel called k-mer counting, which involves processing large files of …
3D++: Unlocking the next generation of high-performance and energy-efficient architectures using M3D integration
Three-dimensional (3D) integration has frequently been described as a means to overcome
scaling bottlenecks, and advance both “More Moore” and “More Than Moore” through the …
scaling bottlenecks, and advance both “More Moore” and “More Than Moore” through the …
A Survey of Processing Systems for Phylogenetics and Population Genetics
The COVID-19 pandemic brought Bioinformatics into the spotlight, revealing that several
existing methods, algorithms, and tools were not well prepared to handle large amounts of …
existing methods, algorithms, and tools were not well prepared to handle large amounts of …
Noc-enabled 3d heterogeneous manycore systems for big-data applications
High-performance heterogeneous computing systems are suitable for big-data applications.
However, the use of off-chip interconnects (eg, PCIe in discrete CPU and GPU based …
However, the use of off-chip interconnects (eg, PCIe in discrete CPU and GPU based …