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Current challenges and best-practice protocols for microbiome analysis
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …
sequencing techniques has significantly enhanced our understanding on metabolic …
Ancient DNA analysis
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …
first ancient nuclear genomes could only be characterized after high-throughput sequencing …
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Metagenomic assembly enables new organism discovery from microbial communities, but it
can only capture few abundant organisms from most metagenomes. Here we present …
can only capture few abundant organisms from most metagenomes. Here we present …
[HTML][HTML] MicrobiotaProcess: A comprehensive R package for deep mining microbiome
The data output from microbiome research is growing at an accelerating rate, yet mining the
data quickly and efficiently remains difficult. There is still a lack of an effective data structure …
data quickly and efficiently remains difficult. There is still a lack of an effective data structure …
Resistant starch intake facilitates weight loss in humans by resha** the gut microbiota
Emerging evidence suggests that modulation of gut microbiota by dietary fibre may offer
solutions for metabolic disorders. In a randomized placebo-controlled crossover design trial …
solutions for metabolic disorders. In a randomized placebo-controlled crossover design trial …
Identification of antimicrobial peptides from the human gut microbiome using deep learning
Y Ma, Z Guo, B ** infant gut microbiome and resistome: a randomized trial
M Reyman, MA Van Houten, RL Watson… - Nature …, 2022 - nature.com
Broad-spectrum antibiotics for suspected early-onset neonatal sepsis (sEONS) may have
pronounced effects on gut microbiome development and selection of antimicrobial …
pronounced effects on gut microbiome development and selection of antimicrobial …
Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients
The gut microbiome has been shown to influence the response of tumors to anti–PD-1
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade
Abstract Treatment with combined immune checkpoint blockade (CICB) targeting CTLA-4
and PD-1 is associated with clinical benefit across tumor types, but also a high rate of …
and PD-1 is associated with clinical benefit across tumor types, but also a high rate of …
[HTML][HTML] Alterations in gut microbiota of patients with COVID-19 during time of hospitalization
Background & Aims Although severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) infects gastrointestinal tissues, little is known about the roles of gut commensal microbes …
2) infects gastrointestinal tissues, little is known about the roles of gut commensal microbes …