Production of microalgae with high lipid content and their potential as sources of nutraceuticals

A Udayan, AK Pandey, R Sirohi, N Sreekumar… - Phytochemistry …, 2023 - Springer
In the current global scenario, the world is under a serious dilemma due to the increasing
human population, industrialization, and urbanization. The ever-increasing need for fuels …

[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen… - Nature …, 2021 - nature.com
High-throughput amplicon sequencing of large genomic regions remains challenging for
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …

Next generation sequencing approaches to evaluate water and wastewater quality

E Garner, BC Davis, E Milligan, MF Blair, I Keenum… - Water Research, 2021 - Elsevier
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …

Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench

J Liu, Y Zheng, H Lin, X Wang, M Li, Y Liu, M Yu… - Microbiome, 2019 - Springer
Abstract Background The Mariana Trench is the deepest known site in the Earth's oceans,
reaching a depth of~ 11,000 m at the Challenger Deep. Recent studies reveal that hadal …

Recent insights into the tick microbiome gained through next-generation sequencing

TL Greay, AW Gofton, A Paparini, UM Ryan… - Parasites & vectors, 2018 - Springer
The tick microbiome comprises communities of microorganisms, including viruses, bacteria
and eukaryotes, and is being elucidated through modern molecular techniques. The advent …

Metagenomics versus total RNA sequencing: most accurate data-processing tools, microbial identification accuracy and perspectives for ecological assessments

CA Hempel, N Wright, J Harvie, JS Hleap… - Nucleic Acids …, 2022 - academic.oup.com
Metagenomics and total RNA sequencing (total RNA-Seq) have the potential to improve the
taxonomic identification of diverse microbial communities, which could allow for the …

A soluble fiber diet increases Bacteroides fragilis group abundance and immunoglobulin A production in the gut

A Nakajima, T Sasaki, K Itoh, T Kitahara… - Applied and …, 2020 - Am Soc Microbiol
Immunoglobulin A (IgA) is essential for defense of the intestinal mucosa against harmful
pathogens. Previous studies have shown that Bacteroidetes, the major phylum of gut …

[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics

JA Blakeley-Ruiz, M Kleiner - Computational and structural biotechnology …, 2022 - Elsevier
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …

Metagenomic exploration of antibiotic resistome in treated wastewater effluents and their receiving water

S Raza, H Jo, J Kim, H Shin, HG Hur, T Unno - Science of the Total …, 2021 - Elsevier
Environmental dissemination of antimicrobial resistance is a global health problem.
Antimicrobial-resistant bacteria and antibiotic-resistant genes (ARGs) are constantly …