Data-driven methods for accelerating polymer design
TK Patra - ACS Polymers Au, 2021 - ACS Publications
Optimal design of polymers is a challenging task due to their enormous chemical and
configurational space. Recent advances in computations, machine learning, and increasing …
configurational space. Recent advances in computations, machine learning, and increasing …
A renaissance of neural networks in drug discovery
Introduction: Neural networks are becoming a very popular method for solving machine
learning and artificial intelligence problems. The variety of neural network types and their …
learning and artificial intelligence problems. The variety of neural network types and their …
Deep architectures and deep learning in chemoinformatics: the prediction of aqueous solubility for drug-like molecules
Shallow machine learning methods have been applied to chemoinformatics problems with
some success. As more data becomes available and more complex problems are tackled …
some success. As more data becomes available and more complex problems are tackled …
The graph neural network model
Many underlying relationships among data in several areas of science and engineering, eg,
computer vision, molecular chemistry, molecular biology, pattern recognition, and data …
computer vision, molecular chemistry, molecular biology, pattern recognition, and data …
Graph kernels for chemical informatics
Increased availability of large repositories of chemical compounds is creating new
challenges and opportunities for the application of machine learning methods to problems in …
challenges and opportunities for the application of machine learning methods to problems in …
HiGNN: A hierarchical informative graph neural network for molecular property prediction equipped with feature-wise attention
Elucidating and accurately predicting the druggability and bioactivities of molecules plays a
pivotal role in drug design and discovery and remains an open challenge. Recently, graph …
pivotal role in drug design and discovery and remains an open challenge. Recently, graph …
Machine Learning Methods for Property Prediction in Chemoinformatics: Quo Vadis?
This paper is focused on modern approaches to machine learning, most of which are as yet
used infrequently or not at all in chemoinformatics. Machine learning methods are …
used infrequently or not at all in chemoinformatics. Machine learning methods are …
[PDF][PDF] The principled design of large-scale recursive neural network architectures--dag-rnns and the protein structure prediction problem
We describe a general methodology for the design of large-scale recursive neural network
architectures (DAG-RNNs) which comprises three fundamental steps:(1) representation of a …
architectures (DAG-RNNs) which comprises three fundamental steps:(1) representation of a …
[PDF][PDF] Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity
Motivation: Small molecules play a fundamental role in organic chemistry and biology. They
can be used to probe biological systems and to discover new drugs and other useful …
can be used to probe biological systems and to discover new drugs and other useful …
A self-organizing map for adaptive processing of structured data
Recent developments in the area of neural networks produced models capable of dealing
with structured data. Here, we propose the first fully unsupervised model, namely an …
with structured data. Here, we propose the first fully unsupervised model, namely an …