Next-generation cophylogeny: unravelling eco-evolutionary processes
A fundamental question in evolutionary biology is how microevolutionary processes
translate into species diversification. Cophylogeny provides an appropriate framework to …
translate into species diversification. Cophylogeny provides an appropriate framework to …
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae: Diplostephium)
High‐throughput sequencing is hel** biologists to overcome the difficulties of inferring the
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …
PACo: a novel procrustes application to cophylogenetic analysis
We present Procrustean Approach to Cophylogeny (PACo), a novel statistical tool to test for
congruence between phylogenetic trees, or between phylogenetic distance matrices of …
congruence between phylogenetic trees, or between phylogenetic distance matrices of …
FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction
There is a great interest in increasing proteins' stability to widen their usability in numerous
biomedical and biotechnological applications. However, native proteins cannot usually …
biomedical and biotechnological applications. However, native proteins cannot usually …
Unifying approaches from statistical genetics and phylogenetics for map** phenotypes in structured populations
In both statistical genetics and phylogenetics, a major goal is to identify correlations between
genetic loci or other aspects of the phenotype or environment and a focal trait. In these 2 …
genetic loci or other aspects of the phenotype or environment and a focal trait. In these 2 …
Hundreds of nuclear and plastid loci yield novel insights into orchid relationships
PREMISE The inference of evolutionary relationships in the species‐rich family Orchidaceae
has hitherto relied heavily on plastid DNA sequences and limited taxon sampling. Previous …
has hitherto relied heavily on plastid DNA sequences and limited taxon sampling. Previous …
paco: implementing Procrustean Approach to Cophylogeny in R
The concordance of evolutionary histories and extant species interactions provides a useful
metric for addressing questions of how the structure of ecological communities is influenced …
metric for addressing questions of how the structure of ecological communities is influenced …
Phylogenetic convolutional neural networks in metagenomics
D Fioravanti, Y Giarratano, V Maggio, C Agostinelli… - BMC …, 2018 - Springer
Abstract Background Convolutional Neural Networks can be effectively used only when data
are endowed with an intrinsic concept of neighbourhood in the input space, as is the case of …
are endowed with an intrinsic concept of neighbourhood in the input space, as is the case of …
The radiation of cynodonts and the ground plan of mammalian morphological diversity
Cynodont therapsids diversified extensively after the Permo-Triassic mass extinction event,
and gave rise to mammals in the Jurassic. We use an enlarged and revised dataset of …
and gave rise to mammals in the Jurassic. We use an enlarged and revised dataset of …
Both temperature fluctuations and East Asian monsoons have driven plant diversification in the karst ecosystems from southern China
Karst ecosystems in southern China are species‐rich and have high levels of endemism, yet
little is known regarding the evolutionary processes responsible for the origin and …
little is known regarding the evolutionary processes responsible for the origin and …