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Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
Chloroplot: an online program for the versatile plotting of organelle genomes
Understanding the complexity of genomic structures and their unique architecture is linked
with the power of visualization tools used to represent these features. Such tools should be …
with the power of visualization tools used to represent these features. Such tools should be …
Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae
Phylogenomic analyses have helped resolve many recalcitrant relationships in the
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …
Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl
DF Morales-Briones, G Kadereit, DT Tefarikis… - Systematic …, 2021 - academic.oup.com
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
Target capture and genome skimming for plant diversity studies
Recent technological advances in long‐read high‐throughput sequencing and assembly
methods have facilitated the generation of annotated chromosome‐scale whole‐genome …
methods have facilitated the generation of annotated chromosome‐scale whole‐genome …
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants
Genome analysis of the pico-eukaryotic marine green alga Prasinoderma coloniale CCMP
1413 unveils the existence of a novel phylum within green plants (Viridiplantae), the …
1413 unveils the existence of a novel phylum within green plants (Viridiplantae), the …
Phylogenomic conflict analyses in the apple genus Malus sl reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex …
Phylogenomic evidence from an increasing number of studies has demonstrated that
different data sets and analytical approaches often reconstruct strongly supported but …
different data sets and analytical approaches often reconstruct strongly supported but …
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set
Premise To further advance the understanding of the species‐rich, economically and
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …
Highly resolved papilionoid legume phylogeny based on plastid phylogenomics
Comprising 501 genera and around 14,000 species, Papilionoideae is not only the largest
subfamily of Fabaceae (Leguminosae; legumes), but also one of the most extraordinarily …
subfamily of Fabaceae (Leguminosae; legumes), but also one of the most extraordinarily …
Defining coalescent genes: theory meets practice in organelle phylogenomics
JJ Doyle - Systematic biology, 2022 - academic.oup.com
The species tree paradigm that dominates current molecular systematic practice infers
species trees from collections of sequences under assumptions of the multispecies …
species trees from collections of sequences under assumptions of the multispecies …