Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

Abscisic acid dynamics, signaling, and functions in plants

K Chen, GJ Li, RA Bressan, CP Song… - Journal of integrative …, 2020 - Wiley Online Library
Abscisic acid (ABA) is an important phytohormone regulating plant growth, development,
and stress responses. It has an essential role in multiple physiological processes of plants …

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

T Brůna, KJ Hoff, A Lomsadze, M Stanke… - NAR genomics and …, 2021 - academic.oup.com
The task of eukaryotic genome annotation remains challenging. Only a few genomes could
serve as standards of annotation achieved through a tremendous investment of human …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

[HTML][HTML] Seaweed phenolics: From extraction to applications

J Cotas, A Leandro, P Monteiro, D Pacheco… - Marine drugs, 2020 - mdpi.com
Seaweeds have attracted high interest in recent years due to their chemical and bioactive
properties to find new molecules with valuable applications for humankind. Phenolic …

Origin and early evolution of the plant terpene synthase family

Q Jia, R Brown, TG Köllner, J Fu, X Chen… - Proceedings of the …, 2022 - pnas.org
As a midsized gene family conserved more by lineage than function, the typical plant
terpene synthases (TPSs) could be a valuable tool to examine plant evolution. TPSs are …

Genomes of multicellular algal sisters to land plants illuminate signaling network evolution

X Feng, J Zheng, I Irisarri, H Yu, B Zheng, Z Ali… - Nature Genetics, 2024 - nature.com
Zygnematophyceae are the algal sisters of land plants. Here we sequenced four genomes of
filamentous Zygnematophyceae, including chromosome-scale assemblies for three strains …

NACs, generalist in plant life

K Han, Y Zhao, Y Sun, Y Li - Plant Biotechnology Journal, 2023 - Wiley Online Library
Plant‐specific NAC proteins constitute a major transcription factor family that is well‐known
for its roles in plant growth, development, and responses to abiotic and biotic stresses. In …

RAF-like protein kinases mediate a deeply conserved, rapid auxin response

A Kuhn, M Roosjen, S Mutte, SM Dubey, VPC Carrasco… - Cell, 2024 - cell.com
The plant-signaling molecule auxin triggers fast and slow cellular responses across land
plants and algae. The nuclear auxin pathway mediates gene expression and controls …

Plant evolution driven by interactions with symbiotic and pathogenic microbes

PM Delaux, S Schornack - Science, 2021 - science.org
BACKGROUND Microbial interactions have shaped plant diversity in terrestrial ecosystems.
By forming mutually beneficial symbioses, microbes helped plants colonize land more than …