RNA polymerase II speed: a key player in controlling and adapting transcriptome composition

L Muniz, E Nicolas, D Trouche - The EMBO journal, 2021 - embopress.org
Abstract RNA polymerase II (RNA Pol II) speed or elongation rate, ie, the number of
nucleotides synthesized per unit of time, is a major determinant of transcriptome …

Nascent RNA analyses: tracking transcription and its regulation

EM Wissink, A Vihervaara, ND Tippens… - Nature Reviews …, 2019 - nature.com
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …

Enhancer control of transcriptional bursting

T Fukaya, B Lim, M Levine - Cell, 2016 - cell.com
Transcription is episodic, consisting of a series of discontinuous bursts. Using live-imaging
methods and quantitative analysis, we examine transcriptional bursting in living Drosophila …

Molecular basis and biological function of variability in spatial genome organization

EH Finn, T Misteli - Science, 2019 - science.org
BACKGROUND The eukaryotic genome is hierarchically organized in the cell nucleus into
DNA loops, chromatin domains, compartments, and, ultimately, chromosomes. Many of the …

Mammalian genes are transcribed with widely different bursting kinetics

DM Suter, N Molina, D Gatfield, K Schneider… - science, 2011 - science.org
In prokaryotes and eukaryotes, most genes appear to be transcribed during short periods
called transcriptional bursts, interspersed by silent intervals. We describe how such bursts …

Genetic determinants and cellular constraints in noisy gene expression

A Sanchez, I Golding - Science, 2013 - science.org
In individual cells, transcription is a random process obeying single-molecule kinetics. Often,
it occurs in a bursty, intermittent manner. The frequency and size of these bursts affect the …

Transcriptional burst frequency and burst size are equally modulated across the human genome

RD Dar, BS Razooky, A Singh… - Proceedings of the …, 2012 - National Acad Sciences
Gene expression occurs either as an episodic process, characterized by pulsatile bursts, or
as a constitutive process, characterized by a Poisson-like accumulation of gene products. It …

Control of transcriptional elongation

H Kwak, JT Lis - Annual review of genetics, 2013 - annualreviews.org
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …

Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning

HG Garcia, M Tikhonov, A Lin, T Gregor - Current biology, 2013 - cell.com
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …

General properties of transcriptional time series in Escherichia coli

L So, A Ghosh, C Zong, LA Sepúlveda, R Segev… - Nature …, 2011 - nature.com
Gene activity is described by the time series of discrete, stochastic mRNA production events.
This transcriptional time series shows intermittent, bursty behavior. One consequence of this …