RNA polymerase II speed: a key player in controlling and adapting transcriptome composition
L Muniz, E Nicolas, D Trouche - The EMBO journal, 2021 - embopress.org
Abstract RNA polymerase II (RNA Pol II) speed or elongation rate, ie, the number of
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
nucleotides synthesized per unit of time, is a major determinant of transcriptome …
Nascent RNA analyses: tracking transcription and its regulation
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …
genome. Decoding of this information begins with regulated transcription of genomic DNA …
Enhancer control of transcriptional bursting
Transcription is episodic, consisting of a series of discontinuous bursts. Using live-imaging
methods and quantitative analysis, we examine transcriptional bursting in living Drosophila …
methods and quantitative analysis, we examine transcriptional bursting in living Drosophila …
Molecular basis and biological function of variability in spatial genome organization
EH Finn, T Misteli - Science, 2019 - science.org
BACKGROUND The eukaryotic genome is hierarchically organized in the cell nucleus into
DNA loops, chromatin domains, compartments, and, ultimately, chromosomes. Many of the …
DNA loops, chromatin domains, compartments, and, ultimately, chromosomes. Many of the …
Mammalian genes are transcribed with widely different bursting kinetics
In prokaryotes and eukaryotes, most genes appear to be transcribed during short periods
called transcriptional bursts, interspersed by silent intervals. We describe how such bursts …
called transcriptional bursts, interspersed by silent intervals. We describe how such bursts …
Genetic determinants and cellular constraints in noisy gene expression
In individual cells, transcription is a random process obeying single-molecule kinetics. Often,
it occurs in a bursty, intermittent manner. The frequency and size of these bursts affect the …
it occurs in a bursty, intermittent manner. The frequency and size of these bursts affect the …
Transcriptional burst frequency and burst size are equally modulated across the human genome
Gene expression occurs either as an episodic process, characterized by pulsatile bursts, or
as a constitutive process, characterized by a Poisson-like accumulation of gene products. It …
as a constitutive process, characterized by a Poisson-like accumulation of gene products. It …
Control of transcriptional elongation
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …
transcriptional regulation. Although traditional genetic and biochemical studies have …
Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …
program. The resulting macroscopic domains have been mainly characterized by their levels …
General properties of transcriptional time series in Escherichia coli
Gene activity is described by the time series of discrete, stochastic mRNA production events.
This transcriptional time series shows intermittent, bursty behavior. One consequence of this …
This transcriptional time series shows intermittent, bursty behavior. One consequence of this …