Single-cell technologies: From research to application

L Wen, G Li, T Huang, W Geng, H Pei, J Yang, M Zhu… - The Innovation, 2022 - cell.com
In recent years, more and more single-cell technologies have been developed. A vast
amount of single-cell omics data has been generated by large projects, such as the Human …

Single-cell transcriptomics reveals heterogeneity in plant responses to the environment: a focus on biotic and abiotic interactions

R Tenorio Berrío, M Dubois - Journal of Experimental Botany, 2024 - academic.oup.com
Biotic and abiotic environmental cues are major factors influencing plant growth and
productivity. Interactions with biotic (eg symbionts and pathogens) and abiotic (eg changes …

<? sty\usepackage {wasysym}?> scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases

Z He, Y Luo, X Zhou, T Zhu, Y Lan… - Nucleic acids …, 2024 - academic.oup.com
Recent advancements in single-cell RNA sequencing (scRNA-seq) technology have
enabled the comprehensive profiling of gene expression patterns at the single-cell level …

The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution

L Wang, MC Wan, RY Liao, J Xu, ZG Xu, HC Xue… - Developmental Cell, 2023 - cell.com
Bryophytes represent a sister to the rest of land plants. Despite their evolutionary importance
and relatively simple body plan, a comprehensive understanding of the cell types and …

Spatially resolved transcriptomic analysis of the germinating barley grain

M Peirats-Llobet, C Yi, LC Liew… - Nucleic acids …, 2023 - academic.oup.com
Seeds are a vital source of calories for humans and a unique stage in the life cycle of
flowering plants. During seed germination, the embryo undergoes major developmental …

AraLeTA: An Arabidopsis leaf expression atlas across diurnal and developmental scales

GYW Vong, K McCarthy, W Claydon, SJ Davis… - Plant …, 2024 - academic.oup.com
Mature plant leaves are a composite of distinct cell types, including epidermal, mesophyll,
and vascular cells. Notably, the proportion of these cells and the relative transcript …

Challenges and perspectives in applying single nuclei RNA-seq technology in plant biology

SA Cervantes-Pérez, S Thibivillliers, S Tennant… - Plant Science, 2022 - Elsevier
Plant single-cell RNA-seq technology quantifies the abundance of plant transcripts at a
single-cell resolution. Deciphering the transcriptomes of each plant cell, their regulation …

[HTML][HTML] Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice

MA Reynoso, AT Borowsky, GC Pauluzzi, E Yeung… - Developmental cell, 2022 - cell.com
Understanding how roots modulate development under varied irrigation or rainfall is crucial
for development of climate-resilient crops. We established a toolbox of tagged rice lines to …

An efficient and universal protoplast isolation protocol suitable for transient gene expression analysis and single-cell RNA sequencing

J Wang, Y Wang, T Lü, X Yang, J Liu, Y Dong… - International Journal of …, 2022 - mdpi.com
The recent advent of single-cell RNA sequencing (scRNA-seq) has enabled access to the
developmental landscape of a complex organ by monitoring the differentiation trajectory of …

Gynoecium and fruit development in Arabidopsis

H Herrera-Ubaldo, S de Folter - Development, 2022 - journals.biologists.com
Flowering plants produce flowers and one of the most complex floral structures is the pistil or
the gynoecium. All the floral organs differentiate from the floral meristem. Various reviews …