Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

Recent advances and applications of deep learning methods in materials science

K Choudhary, B DeCost, C Chen, A Jain… - npj Computational …, 2022 - nature.com
Deep learning (DL) is one of the fastest-growing topics in materials data science, with
rapidly emerging applications spanning atomistic, image-based, spectral, and textual data …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Machine learning for alloys

GLW Hart, T Mueller, C Toher, S Curtarolo - Nature Reviews Materials, 2021 - nature.com
Alloy modelling has a history of machine-learning-like approaches, preceding the tide of
data-science-inspired work. The dawn of computational databases has made the integration …

A survey on deep learning and its applications

S Dong, P Wang, K Abbas - Computer Science Review, 2021 - Elsevier
Deep learning, a branch of machine learning, is a frontier for artificial intelligence, aiming to
be closer to its primary goal—artificial intelligence. This paper mainly adopts the summary …

Equivariant message passing for the prediction of tensorial properties and molecular spectra

K Schütt, O Unke, M Gastegger - … Conference on Machine …, 2021 - proceedings.mlr.press
Message passing neural networks have become a method of choice for learning on graphs,
in particular the prediction of chemical properties and the acceleration of molecular …

Machine learning force fields

OT Unke, S Chmiela, HE Sauceda… - Chemical …, 2021 - ACS Publications
In recent years, the use of machine learning (ML) in computational chemistry has enabled
numerous advances previously out of reach due to the computational complexity of …

[HTML][HTML] A gentle introduction to graph neural networks

B Sanchez-Lengeling, E Reif, A Pearce, AB Wiltschko - Distill, 2021 - staging.distill.pub
A Gentle Introduction to Graph Neural Networks Distill About Prize Submit A Gentle Introduction
to Graph Neural Networks Neural networks have been adapted to leverage the structure and …

Self-supervised graph transformer on large-scale molecular data

Y Rong, Y Bian, T Xu, W **e, Y Wei… - Advances in neural …, 2020 - proceedings.neurips.cc
How to obtain informative representations of molecules is a crucial prerequisite in AI-driven
drug design and discovery. Recent researches abstract molecules as graphs and employ …

Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …