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Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation
The future development of personalized medicine depends on a vast exchange of data from
different sources, as well as harmonized integrative analysis of large-scale clinical health …
different sources, as well as harmonized integrative analysis of large-scale clinical health …
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Computational models are often employed in systems biology to study the dynamic
behaviours of complex systems. With the rise in the number of computational models, finding …
behaviours of complex systems. With the rise in the number of computational models, finding …
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Computational models have great potential to accelerate bioscience, bioengineering, and
medicine. However, it remains challenging to reproduce and reuse simulations, in part …
medicine. However, it remains challenging to reproduce and reuse simulations, in part …
Modeling should be an independent scientific discipline
Software modeling started as a paradigm to help developers build better software faster by
enabling them to specify, reason and manipulate software systems at a higher-abstraction …
enabling them to specify, reason and manipulate software systems at a higher-abstraction …
[HTML][HTML] Construction of multiscale genome-scale metabolic models: frameworks and challenges
X Bi, Y Liu, J Li, G Du, X Lv, L Liu - Biomolecules, 2022 - mdpi.com
Genome-scale metabolic models (GEMs) are effective tools for metabolic engineering and
have been widely used to guide cell metabolic regulation. However, the single gene–protein …
have been widely used to guide cell metabolic regulation. However, the single gene–protein …
[PDF][PDF] EU-STANDS4PM consortium; et al. Computational models for clinical applications in personalized medicine—Guidelines and recommendations for data …
The future development of personalized medicine depends on a vast exchange of data from
different sources, as well as harmonized integrative analysis of large-scale clinical health …
different sources, as well as harmonized integrative analysis of large-scale clinical health …
Specifications of standards in systems and synthetic biology: status and developments in 2020
Specifications of standards in systems and synthetic biology: status and developments in 2020
Skip to content Should you have institutional access? Here's how to get it ... De Gruyter € EUR …
Skip to content Should you have institutional access? Here's how to get it ... De Gruyter € EUR …
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
This special issue of the Journal of Integrative Bioinformatics contains updated
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
Comprehensive, predictive computational models have significant potential for science,
bioengineering, and medicine. One promising way to achieve more predictive models is to …
bioengineering, and medicine. One promising way to achieve more predictive models is to …
The BioRECIPE knowledge representation format
E Holtzapple, G Zhou, H Luo, D Tang… - ACS Synthetic …, 2024 - ACS Publications
The BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability,
Preserving, and Execution) knowledge representation format was introduced to standardize …
Preserving, and Execution) knowledge representation format was introduced to standardize …