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Current stage and future perspectives for homology modeling, molecular dynamics simulations, machine learning with molecular dynamics, and quantum computing …
The structural ensembles of intrinsically disordered proteins (IDPs) and proteins with
intrinsically disordered regions (IDRs) cannot be easily characterized using conventional …
intrinsically disordered regions (IDRs) cannot be easily characterized using conventional …
[HTML][HTML] Single-point mutations in disordered proteins: Linking sequence, ensemble, and function
Highlights•Single point mutations in intrinsically disordered protein regions (IDRs) are poorly
studied.•Multiple studies show that single-point mutations can change IDR structural …
studied.•Multiple studies show that single-point mutations can change IDR structural …
In silico functional, structural and pathogenicity analysis of missense single nucleotide polymorphisms in human MCM6 gene
Single nucleotide polymorphisms (SNPs) are one of the most common determinants and
potential biomarkers of human disease pathogenesis. SNPs could alter amino acid …
potential biomarkers of human disease pathogenesis. SNPs could alter amino acid …
[HTML][HTML] Compositional bias of intrinsically disordered proteins and regions and their predictions
Intrinsically disordered regions (IDRs) carry out many cellular functions and vary in length
and placement in protein sequences. This diversity leads to variations in the underlying …
and placement in protein sequences. This diversity leads to variations in the underlying …
Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures
Recent advances in AI-based methods have revolutionized the field of structural biology.
Concomitantly, high-throughput sequencing and functional genomics have generated …
Concomitantly, high-throughput sequencing and functional genomics have generated …
Conformational ensembles of the human intrinsically disordered proteome: Bridging chain compaction with function and sequence conservation
Intrinsically disordered proteins and regions (collectively IDRs) are pervasive across
proteomes in all kingdoms of life, help shape biological functions, and are involved in …
proteomes in all kingdoms of life, help shape biological functions, and are involved in …
A multiscale approach reveals the molecular architecture of the autoinhibited kinesin KIF5A
G Carrington, U Fatima, I Caramujo, T Lewis… - Journal of Biological …, 2024 - jbc.org
Kinesin-1 is a microtubule motor that transports cellular cargo along microtubules. KIF5A is
one of three kinesin-1 isoforms in humans, all of which are autoinhibited by an interaction …
one of three kinesin-1 isoforms in humans, all of which are autoinhibited by an interaction …
Prediction and assessment of deleterious and disease causing nonsynonymous single nucleotide polymorphisms (nsSNPs) in human FOXP4 gene: An in-silico study
In humans, FOXP gene family is involved in embryonic development and cancer
progression. The FOXP4 (Forkhead box protein P4) gene belongs to this FOXP gene family …
progression. The FOXP4 (Forkhead box protein P4) gene belongs to this FOXP gene family …
In silico functional and structural analysis of non-synonymous single nucleotide polymorphisms (nsSNPs) in human paired box 4 gene
In human genome, members of Paired box (PAX) transcription factor family are highly
sequence-specific DNA-binding proteins. Among PAX gene family members, PAX4 gene …
sequence-specific DNA-binding proteins. Among PAX gene family members, PAX4 gene …
Enhancers are genes that express organizational RNAs
JS Mattick - Frontiers in RNA Research, 2023 - frontiersin.org
A longstanding enigma in molecular biology is the lack of scaling of protein-coding genes
with developmental complexity, referred to as the g-value paradox. On the other hand, a …
with developmental complexity, referred to as the g-value paradox. On the other hand, a …