Current stage and future perspectives for homology modeling, molecular dynamics simulations, machine learning with molecular dynamics, and quantum computing …

O Coskuner-Weber, VN Uversky - Current Protein and Peptide …, 2024 - benthamdirect.com
The structural ensembles of intrinsically disordered proteins (IDPs) and proteins with
intrinsically disordered regions (IDRs) cannot be easily characterized using conventional …

[HTML][HTML] Single-point mutations in disordered proteins: Linking sequence, ensemble, and function

E Flores, N Acharya, CA Castañeda… - Current Opinion in …, 2025 - Elsevier
Highlights•Single point mutations in intrinsically disordered protein regions (IDRs) are poorly
studied.•Multiple studies show that single-point mutations can change IDR structural …

In silico functional, structural and pathogenicity analysis of missense single nucleotide polymorphisms in human MCM6 gene

MM Kamal, MS Mia, MO Faruque, MG Rabby… - Scientific Reports, 2024 - nature.com
Single nucleotide polymorphisms (SNPs) are one of the most common determinants and
potential biomarkers of human disease pathogenesis. SNPs could alter amino acid …

[HTML][HTML] Compositional bias of intrinsically disordered proteins and regions and their predictions

B Zhao, L Kurgan - Biomolecules, 2022 - mdpi.com
Intrinsically disordered regions (IDRs) carry out many cellular functions and vary in length
and placement in protein sequences. This diversity leads to variations in the underlying …

Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures

S Kwon, J Safer, DT Nguyen, D Hoksza, P May… - Nature …, 2024 - nature.com
Recent advances in AI-based methods have revolutionized the field of structural biology.
Concomitantly, high-throughput sequencing and functional genomics have generated …

A multiscale approach reveals the molecular architecture of the autoinhibited kinesin KIF5A

G Carrington, U Fatima, I Caramujo, T Lewis… - Journal of Biological …, 2024 - jbc.org
Kinesin-1 is a microtubule motor that transports cellular cargo along microtubules. KIF5A is
one of three kinesin-1 isoforms in humans, all of which are autoinhibited by an interaction …

In silico functional and structural analysis of non-synonymous single nucleotide polymorphisms (nsSNPs) in human paired box 4 gene

MM Kamal, MN Islam, MG Rabby, MA Zahid… - Biochemical …, 2024 - Springer
In human genome, members of Paired box (PAX) transcription factor family are highly
sequence-specific DNA-binding proteins. Among PAX gene family members, PAX4 gene …

Enhancers are genes that express organizational RNAs

JS Mattick - Frontiers in RNA Research, 2023 - frontiersin.org
A longstanding enigma in molecular biology is the lack of scaling of protein-coding genes
with developmental complexity, referred to as the g-value paradox. On the other hand, a …