Introducing single cell stereo-sequencing technology to transform the plant transcriptome landscape
G Bawa, Z Liu, X Yu, LSP Tran, X Sun - Trends in Plant Science, 2024 - cell.com
Single cell RNA-sequencing (scRNA-seq) advancements have helped detect transcriptional
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants
C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
Identification of novel regulators required for early development of vein pattern in the cotyledons by single‐cell RNA‐sequencing
Z Liu, J Wang, Y Zhou, Y Zhang, A Qin, X Yu… - The Plant …, 2022 - Wiley Online Library
The leaf veins of higher plants contain a highly specialized vascular system comprised of
xylem and phloem cells that transport water, organic compounds and mineral nutrients. The …
xylem and phloem cells that transport water, organic compounds and mineral nutrients. The …
Single-cell RNA-sequencing profiles reveal the developmental landscape of the Manihot esculenta Crantz leaves
Y Zang, Y Pei, X Cong, F Ran, L Liu, C Wang… - Plant …, 2024 - academic.oup.com
Abstract Cassava (Manihot esculenta Crantz) is an important crop with a high photosynthetic
rate and high yield. It is classified as a C3–C4 plant based on its photosynthetic and …
rate and high yield. It is classified as a C3–C4 plant based on its photosynthetic and …
Unraveling plant–microbe symbioses using single-cell and spatial transcriptomics
Plant–microbe symbioses require intense interaction and genetic coordination to
successfully establish in specific cell types of the host and symbiont. Traditional RNA-seq …
successfully establish in specific cell types of the host and symbiont. Traditional RNA-seq …
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis
The symbiotic interaction of plants with arbuscular mycorrhizal (AM) fungi is ancient and
widespread. Plants provide AM fungi with carbon in exchange for nutrients and water …
widespread. Plants provide AM fungi with carbon in exchange for nutrients and water …
Comparisons of two receptor-MAPK pathways in a single cell-type reveal mechanisms of signalling specificity
Y Ma, I Flückiger, J Nicolet, J Pang, JB Dickinson… - Nature plants, 2024 - nature.com
Cells harbour numerous receptor pathways to respond to diverse stimuli, yet often share
common downstream signalling components. Mitogen-activated protein kinase (MPK) …
common downstream signalling components. Mitogen-activated protein kinase (MPK) …
Integrated mass spectrometry imaging and single‐cell transcriptome atlas strategies provide novel insights into taxoid biosynthesis and transport in Taxus mairei …
C Yu, K Hou, H Zhang, X Liang, C Chen… - The Plant …, 2023 - Wiley Online Library
Taxol, which is a widely used important chemotherapeutic agent, was originally isolated
from Taxus stem barks. However, little is known about the precise distribution of taxoids and …
from Taxus stem barks. However, little is known about the precise distribution of taxoids and …
The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution
L Wang, MC Wan, RY Liao, J Xu, ZG Xu, HC Xue… - Developmental Cell, 2023 - cell.com
Bryophytes represent a sister to the rest of land plants. Despite their evolutionary importance
and relatively simple body plan, a comprehensive understanding of the cell types and …
and relatively simple body plan, a comprehensive understanding of the cell types and …