Introducing single cell stereo-sequencing technology to transform the plant transcriptome landscape

G Bawa, Z Liu, X Yu, LSP Tran, X Sun - Trends in Plant Science, 2024 - cell.com
Single cell RNA-sequencing (scRNA-seq) advancements have helped detect transcriptional
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …

Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants

C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …

Identification of novel regulators required for early development of vein pattern in the cotyledons by single‐cell RNA‐sequencing

Z Liu, J Wang, Y Zhou, Y Zhang, A Qin, X Yu… - The Plant …, 2022 - Wiley Online Library
The leaf veins of higher plants contain a highly specialized vascular system comprised of
xylem and phloem cells that transport water, organic compounds and mineral nutrients. The …

Single-cell RNA-sequencing profiles reveal the developmental landscape of the Manihot esculenta Crantz leaves

Y Zang, Y Pei, X Cong, F Ran, L Liu, C Wang… - Plant …, 2024 - academic.oup.com
Abstract Cassava (Manihot esculenta Crantz) is an important crop with a high photosynthetic
rate and high yield. It is classified as a C3–C4 plant based on its photosynthetic and …

Unraveling plant–microbe symbioses using single-cell and spatial transcriptomics

K Serrano, F Tedeschi, SU Andersen… - Trends in Plant Science, 2024 - cell.com
Plant–microbe symbioses require intense interaction and genetic coordination to
successfully establish in specific cell types of the host and symbiont. Traditional RNA-seq …

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

C Grones, T Eekhout, D Shi, M Neumann… - The Plant …, 2024 - academic.oup.com
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …

Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis

K Serrano, M Bezrutczyk, D Goudeau, T Dao… - Nature Plants, 2024 - nature.com
The symbiotic interaction of plants with arbuscular mycorrhizal (AM) fungi is ancient and
widespread. Plants provide AM fungi with carbon in exchange for nutrients and water …

Comparisons of two receptor-MAPK pathways in a single cell-type reveal mechanisms of signalling specificity

Y Ma, I Flückiger, J Nicolet, J Pang, JB Dickinson… - Nature plants, 2024 - nature.com
Cells harbour numerous receptor pathways to respond to diverse stimuli, yet often share
common downstream signalling components. Mitogen-activated protein kinase (MPK) …

Integrated mass spectrometry imaging and single‐cell transcriptome atlas strategies provide novel insights into taxoid biosynthesis and transport in Taxus mairei …

C Yu, K Hou, H Zhang, X Liang, C Chen… - The Plant …, 2023 - Wiley Online Library
Taxol, which is a widely used important chemotherapeutic agent, was originally isolated
from Taxus stem barks. However, little is known about the precise distribution of taxoids and …

The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution

L Wang, MC Wan, RY Liao, J Xu, ZG Xu, HC Xue… - Developmental Cell, 2023 - cell.com
Bryophytes represent a sister to the rest of land plants. Despite their evolutionary importance
and relatively simple body plan, a comprehensive understanding of the cell types and …