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Machine learning applications in genetics and genomics
MW Libbrecht, WS Noble - Nature Reviews Genetics, 2015 - nature.com
The field of machine learning, which aims to develop computer algorithms that improve with
experience, holds promise to enable computers to assist humans in the analysis of large …
experience, holds promise to enable computers to assist humans in the analysis of large …
[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …
generate a plethora of data on the activity and levels of biomolecules within mammalian …
Cell-type-specific responses to fungal infection in plants revealed by single-cell transcriptomics
Pathogen infection is a dynamic process. Here, we employ single-cell transcriptomics to
investigate plant response heterogeneity. By generating an Arabidopsis thaliana leaf atlas …
investigate plant response heterogeneity. By generating an Arabidopsis thaliana leaf atlas …
A draft network of ligand–receptor-mediated multicellular signalling in human
Cell-to-cell communication across multiple cell types and tissues strictly governs proper
functioning of metazoans and extensively relies on interactions between secreted ligands …
functioning of metazoans and extensively relies on interactions between secreted ligands …
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Background System-wide profiling of genes and proteins in mammalian cells produce lists of
differentially expressed genes/proteins that need to be further analyzed for their collective …
differentially expressed genes/proteins that need to be further analyzed for their collective …
Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and …
PCY Woo, SKP Lau, CSF Lam, CCY Lau… - Journal of …, 2012 - journals.asm.org
Recently, we reported the discovery of three novel coronaviruses, bulbul coronavirus
HKU11, thrush coronavirus HKU12, and munia coronavirus HKU13, which were identified …
HKU11, thrush coronavirus HKU12, and munia coronavirus HKU13, which were identified …
A large-scale evaluation of computational protein function prediction
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be …
genomes rapidly grows, the overwhelming majority of protein products can only be …
Effector identification in plant pathogens
Effectors play a central role in determining the outcome of plant− pathogen interactions. As
key virulence proteins, effectors are collectively indispensable for disease development. By …
key virulence proteins, effectors are collectively indispensable for disease development. By …
An efficient algorithm for large-scale detection of protein families
Detection of protein families in large databases is one of the principal research objectives in
structural and functional genomics. Protein family classification can significantly contribute to …
structural and functional genomics. Protein family classification can significantly contribute to …