Opportunities and challenges for ChatGPT and large language models in biomedicine and health

S Tian, Q **, L Yeganova, PT Lai, Q Zhu… - Briefings in …, 2024 - academic.oup.com
ChatGPT has drawn considerable attention from both the general public and domain experts
with its remarkable text generation capabilities. This has subsequently led to the emergence …

PubMed and beyond: biomedical literature search in the age of artificial intelligence

Q **, R Leaman, Z Lu - EBioMedicine, 2024 - thelancet.com
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …

Medcpt: Contrastive pre-trained transformers with large-scale pubmed search logs for zero-shot biomedical information retrieval

Q **, W Kim, Q Chen, DC Comeau, L Yeganova… - …, 2023 - academic.oup.com
Motivation Information retrieval (IR) is essential in biomedical knowledge acquisition and
clinical decision support. While recent progress has shown that language model encoders …

A survey of the recent trends in deep learning for literature based discovery in the biomedical domain

E Cesario, C Comito, E Zumpano - Neurocomputing, 2024 - Elsevier
Every day, enormous amounts of biomedical texts discussing various biomedical topics are
produced. Revealing strong semantic connections hidden in those unstructured data is …

[HTML][HTML] BioREx: improving biomedical relation extraction by leveraging heterogeneous datasets

PT Lai, CH Wei, L Luo, Q Chen, Z Lu - Journal of Biomedical Informatics, 2023 - Elsevier
Biomedical relation extraction (RE) is the task of automatically identifying and characterizing
relations between biomedical concepts from free text. RE is a central task in biomedical …

Artificial intelligence in action: addressing the COVID-19 pandemic with natural language processing

Q Chen, R Leaman, A Allot, L Luo… - Annual review of …, 2021 - annualreviews.org
The COVID-19 (coronavirus disease 2019) pandemic has had a significant impact on
society, both because of the serious health effects of COVID-19 and because of public …

[HTML][HTML] Graph embedding-based link prediction for literature-based discovery in Alzheimer's Disease

Y Pu, D Beck, K Verspoor - Journal of Biomedical Informatics, 2023 - Elsevier
Objective: We explore the framing of literature-based discovery (LBD) as link prediction and
graph embedding learning, with Alzheimer's Disease (AD) as our focus disease context. The …

Exploring the in-context learning ability of large language model for biomedical concept linking

Q Wang, Z Gao, R Xu - ar** of literature-based discovery (1986–2020)
A Kastrin, D Hristovski - Scientometrics, 2021 - Springer
Literature-based discovery (LBD) aims to discover valuable latent relationships between
disparate sets of literatures. This paper presents the first inclusive scientometric overview of …

[HTML][HTML] Enhancing the coverage of SemRep using a relation classification approach

S Ming, R Zhang, H Kilicoglu - Journal of biomedical informatics, 2024 - Elsevier
Objective: Relation extraction is an essential task in the field of biomedical literature mining
and offers significant benefits for various downstream applications, including database …