[HTML][HTML] A review of three-dimensional medical image visualization

R JohnsonChris - Health Data Science, 2022 - spj.science.org
Importance. Medical images are essential for modern medicine and an important research
subject in visualization. However, medical experts are often not aware of the many …

An overview of the topology toolkit

TB Masood, J Budin, M Falk, G Favelier, C Garth… - Topological Methods in …, 2021 - Springer
This software paper gives an overview of the features supported by the Topology ToolKit
(TTK), which is an open-source library for topological data analysis (TDA). TTK implements …

VIAMD: a software for visual interactive analysis of molecular dynamics

R Skanberg, I Hotz, A Ynnerman… - Journal of Chemical …, 2023 - ACS Publications
The typical workflow in molecular dynamics (MD) analysis requires several separate tools,
often resulting in a lack of synergy and interaction between the individual analysis steps …

[HTML][HTML] u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions

P Roudot, WR Legant, Q Zou, KM Dean, T Isogai… - Cell Reports …, 2023 - cell.com
We describe u-track3D, a software package that extends the versatile u-track framework
established in 2D to address the specific challenges of 3D particle tracking. First, we present …

ManiVault: A flexible and extensible visual analytics framework for high-dimensional data

A Vieth, T Kroes, J Thijssen, B van Lew… - … on Visualization and …, 2023 - ieeexplore.ieee.org
Exploration and analysis of high-dimensional data are important tasks in many fields that
produce large and complex data, like the financial sector, systems biology, or cultural …

The moving target of visualization software for an increasingly complex world

G Reina, H Childs, K Matković, K Bühler, M Waldner… - Computers & …, 2020 - Elsevier
Visualization has evolved into a mature scientific field and it has also become widely
accepted as a standard approach in diverse fields, including physics, life sciences, and …

Deep volumetric ambient occlusion

D Engel, T Ropinski - IEEE Transactions on Visualization and …, 2020 - ieeexplore.ieee.org
We present a novel deep learning based technique for volumetric ambient occlusion in the
context of direct volume rendering. Our proposed Deep Volumetric Ambient Occlusion …

sMolBoxes: Dataflow model for molecular dynamics exploration

P Ulbrich, M Waldner, K Furmanová… - … on Visualization and …, 2022 - ieeexplore.ieee.org
We present sMolBoxes, a dataflow representation for the exploration and analysis of long
molecular dynamics (MD) simulations. When MD simulations reach millions of snapshots, a …

scenery: Flexible virtual reality visualization on the Java VM

U Günther, T Pietzsch, A Gupta, KIS Harrington… - arxiv preprint arxiv …, 2019 - arxiv.org
Life science today involves computational analysis of a large amount and variety of data,
such as volumetric data acquired by state-of-the-art microscopes, or mesh data from …

[HTML][HTML] A survey of volume visualization techniques for feature enhancement

C Xu, G Sun, R Liang - Visual Informatics, 2021 - Elsevier
Volume rendering techniques have been developed for decades and have been widely
applied in many research fields, such as medical image visualization, geological …