Bacterial sigma factors and anti-sigma factors: structure, function and distribution

MS Paget - Biomolecules, 2015 - mdpi.com
Sigma factors are multi-domain subunits of bacterial RNA polymerase (RNAP) that play
critical roles in transcription initiation, including the recognition and opening of promoters as …

Bacterial sigma factors: a historical, structural, and genomic perspective

A Feklístov, BD Sharon, SA Darst… - Annual review of …, 2014 - annualreviews.org
Transcription initiation is the crucial focal point of gene expression in prokaryotes. The key
players in this process, sigma factors (σs), associate with the catalytic core RNA polymerase …

Regulation of alternative sigma factor use

S Österberg, T Peso-Santos… - Annual review of …, 2011 - annualreviews.org
Alternative bacterial sigma factors bind the catalytic core RNA polymerase to confer
promoter selectivity on the holoenzyme. The different holoenzymes are thus programmed to …

Antibiotic tolerance is associated with a broad and complex transcriptional response in E. coli

HS Deter, T Hossain, NC Butzin - Scientific reports, 2021 - nature.com
Antibiotic treatment kills a large portion of a population, while a small, tolerant subpopulation
survives. Tolerant bacteria disrupt antibiotic efficacy and increase the likelihood that a …

Structural basis for− 10 promoter element melting by environmentally induced sigma factors

S Campagne, ME Marsh, G Capitani… - Nature structural & …, 2014 - nature.com
Bacterial transcription is controlled by sigma factors, the RNA polymerase subunits that act
as initiation factors. Although a single housekee** sigma factor enables transcription from …

Structural basis of ECF-σ-factor-dependent transcription initiation

W Lin, S Mandal, D Degen, MS Cho, Y Feng… - Nature …, 2019 - nature.com
Extracytoplasmic (ECF) σ factors, the largest class of alternative σ factors, are related to
primary σ factors, but have simpler structures, comprising only two of six conserved …

DNA input classification by a riboregulator-based cell-free perceptron

AJ van der Linden, PA Pieters, MW Bartelds… - ACS Synthetic …, 2022 - ACS Publications
The ability to recognize molecular patterns is essential for the continued survival of
biological organisms, allowing them to sense and respond to their immediate environment …

Extra cytoplasmic function sigma factors, recent structural insights into promoter recognition and regulation

S Campagne, FHT Allain, JA Vorholt - Current opinion in structural biology, 2015 - Elsevier
Highlights•ECF sigma factors are alternative sigma factors involved in gene expression
regulation.•During growth, ECF sigma factors are sequestered by specific anti-sigma …

Structural basis of bacterial σ28‐mediated transcription reveals roles of the RNA polymerase zinc‐binding domain

W Shi, W Zhou, B Zhang, S Huang, Y Jiang… - The EMBO …, 2020 - embopress.org
In bacteria, σ28 is the flagella‐specific sigma factor that targets RNA polymerase (RNAP) to
control the expression of flagella‐related genes involving bacterial motility and chemotaxis …

Surface growth of a motile bacterial population resembles growth in a chemostat

DA Koster, A Mayo, A Bren, U Alon - Journal of molecular biology, 2012 - Elsevier
The growth behavior in well‐mixed bacterial cultures is relatively well understood. However,
bacteria often grow in heterogeneous conditions on surfaces where their growth is …