Clinical and therapeutic relevance of cancer-associated fibroblasts

Y Chen, KM McAndrews, R Kalluri - Nature reviews Clinical oncology, 2021 - nature.com
Cancer-associated fibroblasts (CAFs) found in primary and metastatic tumours are highly
versatile, plastic and resilient cells that are actively involved in cancer progression through …

Leukemic stem cells and therapy resistance in acute myeloid leukemia

P Stelmach, A Trumpp - Haematologica, 2023 - pmc.ncbi.nlm.nih.gov
A major obstacle in the treatment of acute myeloid leukemia (AML) is refractory disease or
relapse after achieving remission. The latter arises from a few therapy-resistant cells within …

[HTML][HTML] Deciphering cell states and genealogies of human haematopoiesis

C Weng, F Yu, D Yang, M Poeschla, LA Liggett… - Nature, 2024 - nature.com
The human blood system is maintained through the differentiation and massive amplification
of a limited number of long-lived haematopoietic stem cells (HSCs). Perturbations to this …

Integration of whole transcriptome spatial profiling with protein markers

N Ben-Chetrit, X Niu, AD Swett, J Sotelo, MS Jiao… - Nature …, 2023 - nature.com
Spatial transcriptomics and proteomics provide complementary information that
independently transformed our understanding of complex biological processes. However …

Single‐cell RNA sequencing in cancer research

Y Zhang, D Wang, M Peng, L Tang, J Ouyang… - Journal of Experimental …, 2021 - Springer
Single-cell RNA sequencing (scRNA-seq), a technology that analyzes transcriptomes of
complex tissues at single-cell levels, can identify differential gene expression and epigenetic …

Development and future of droplet microfluidics

L Nan, H Zhang, DA Weitz, HC Shum - Lab on a Chip, 2024 - pubs.rsc.org
Over the past two decades, advances in droplet-based microfluidics have facilitated new
approaches to process and analyze samples with unprecedented levels of precision and …

Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states

R Chaligne, F Gaiti, D Silverbush, JS Schiffman… - Nature …, 2021 - nature.com
Single-cell RNA sequencing has revealed extensive transcriptional cell state diversity in
cancer, often observed independently of genetic heterogeneity, raising the central question …

Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics

AS Nam, R Chaligne, DA Landau - Nature Reviews Genetics, 2021 - nature.com
Cancer represents an evolutionary process through which growing malignant populations
genetically diversify, leading to tumour progression, relapse and resistance to therapy. In …

De novo detection of somatic mutations in high-throughput single-cell profiling data sets

F Muyas, CM Sauer, JE Valle-Inclán, R Li… - Nature …, 2024 - nature.com
Abstract Characterization of somatic mutations at single-cell resolution is essential to study
cancer evolution, clonal mosaicism and cell plasticity. Here, we describe SComatic, an …

Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

K Morita, F Wang, K Jahn, T Hu, T Tanaka… - Nature …, 2020 - nature.com
Clonal diversity is a consequence of cancer cell evolution driven by Darwinian selection.
Precise characterization of clonal architecture is essential to understand the evolutionary …