Using machine learning approaches for multi-omics data analysis: A review

PS Reel, S Reel, E Pearson, E Trucco… - Biotechnology advances, 2021 - Elsevier
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …

Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

Climate warming enhances microbial network complexity and stability

MM Yuan, X Guo, L Wu, YA Zhang, N **ao… - Nature Climate …, 2021 - nature.com
Unravelling the relationships between network complexity and stability under changing
climate is a challenging topic in theoretical ecology that remains understudied in the field of …

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

D Ning, M Yuan, L Wu, Y Zhang, X Guo, X Zhou… - Nature …, 2020 - nature.com
Unraveling the drivers controlling community assembly is a central issue in ecology.
Although it is generally accepted that selection, dispersal, diversification and drift are major …

Global diversity and biogeography of bacterial communities in wastewater treatment plants

L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan… - Nature …, 2019 - nature.com
Microorganisms in wastewater treatment plants (WWTPs) are essential for water purification
to protect public and environmental health. However, the diversity of microorganisms and …

Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

A general framework for quantitatively assessing ecological stochasticity

D Ning, Y Deng, JM Tiedje… - Proceedings of the …, 2019 - National Acad Sciences
Understanding the community assembly mechanisms controlling biodiversity patterns is a
central issue in ecology. Although it is generally accepted that both deterministic and …

Recent advanced technologies for the characterization of xenobiotic-degrading microorganisms and microbial communities

S Mishra, Z Lin, S Pang, W Zhang, P Bhatt… - … in Bioengineering and …, 2021 - frontiersin.org
Global environmental contamination with a complex mixture of xenobiotics has become a
major environmental issue worldwide. Many xenobiotic compounds severely impact the …

[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Diagnosis of soil contamination using microbiological indices: A review on heavy metal pollution

J Tang, J Zhang, L Ren, Y Zhou, J Gao, L Luo… - Journal of …, 2019 - Elsevier
Heavy metal contamination of soil has become a serious global issue because of their
persistence in the environment and the non-biodegradable nature leading to their …