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Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …
are tremendous, the design and discovery of new candidates remain a time and cost …
AggreProt: a web server for predicting and engineering aggregation prone regions in proteins
J Planas-Iglesias, S Borko, J Swiatkowski… - Nucleic Acids …, 2024 - academic.oup.com
Recombinant proteins play pivotal roles in numerous applications including industrial
biocatalysts or therapeutics. Despite the recent progress in computational protein structure …
biocatalysts or therapeutics. Despite the recent progress in computational protein structure …
AMYPred-FRL is a novel approach for accurate prediction of amyloid proteins by using feature representation learning
Amyloid proteins have the ability to form insoluble fibril aggregates that have important
pathogenic effects in many tissues. Such amyloidoses are prominently associated with …
pathogenic effects in many tissues. Such amyloidoses are prominently associated with …
Machine learning prediction of antibody aggregation and viscosity for high concentration formulation development of protein therapeutics
Machine learning has been recently used to predict therapeutic antibody aggregation rates
and viscosity at high concentrations (150 mg/ml). These works focused on commercially …
and viscosity at high concentrations (150 mg/ml). These works focused on commercially …
Are fibrinaloid microclots a cause of autoimmunity in Long Covid and other post-infection diseases?
It is now well established that the blood-clotting protein fibrinogen can polymerise into an
anomalous form of fibrin that is amyloid in character; the resultant clots and microclots entrap …
anomalous form of fibrin that is amyloid in character; the resultant clots and microclots entrap …
Protein aggregation: in silico algorithms and applications
Protein aggregation is a topic of immense interest to the scientific community due to its role
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
Machine learning approaches in diagnosis, prognosis and treatment selection of cardiac amyloidosis
Cardiac amyloidosis is an uncommon restrictive cardiomyopathy featuring an unregulated
amyloid protein deposition that impairs organic function. Early cardiac amyloidosis …
amyloid protein deposition that impairs organic function. Early cardiac amyloidosis …
CORDAX web server: an online platform for the prediction and 3D visualization of aggregation motifs in protein sequences
Motivation Proteins, the molecular workhorses of biological systems, execute a multitude of
critical functions dictated by their precise three-dimensional structures. In a complex and …
critical functions dictated by their precise three-dimensional structures. In a complex and …
ANuPP: a versatile tool to predict aggregation nucleating regions in peptides and proteins
Short aggregation prone sequence motifs can trigger aggregation in peptide and protein
sequences. Most algorithms developed so far to identify potential aggregation prone regions …
sequences. Most algorithms developed so far to identify potential aggregation prone regions …