Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
Two decades of Martini: Better beads, broader scope
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …
been around for nearly two decades. Originally developed for lipid‐based systems by the …
Martini 3: a general purpose force field for coarse-grained molecular dynamics
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution
Multidomain proteins with flexible linkers and disordered regions play important roles in
many cellular processes, but characterizing their conformational ensembles is difficult. We …
many cellular processes, but characterizing their conformational ensembles is difficult. We …
Protein–ligand binding with the coarse-grained Martini model
The detailed understanding of the binding of small molecules to proteins is the key for the
development of novel drugs or to increase the acceptance of substrates by enzymes …
development of novel drugs or to increase the acceptance of substrates by enzymes …
Martini 3 coarse‐grained force field: small molecules
The recent re‐parametrization of the Martini coarse‐grained force field, Martini 3, improved
the accuracy of the model in predicting molecular packing and interactions in molecular …
the accuracy of the model in predicting molecular packing and interactions in molecular …
Improving Martini 3 for disordered and multidomain proteins
Coarse-grained molecular dynamics simulations are a useful tool to determine
conformational ensembles of proteins. Here, we show that the coarse-grained force field …
conformational ensembles of proteins. Here, we show that the coarse-grained force field …
Martini 3 coarse-grained force field for carbohydrates
F Grünewald, MH Punt, EE Jefferys… - Journal of Chemical …, 2022 - ACS Publications
The Martini 3 force field is a full reparametrization of the Martini coarse-grained model for
biomolecular simulations. Due to the improved interaction balance, it allows for a more …
biomolecular simulations. Due to the improved interaction balance, it allows for a more …
The martini model in materials science
The Martini model, a coarse‐grained force field initially developed with biomolecular
simulations in mind, has found an increasing number of applications in the field of soft …
simulations in mind, has found an increasing number of applications in the field of soft …
Microscopic Understanding of the Granular Structure and the Swelling of PEDOT: PSS
The conjugated polymer poly (3, 4-ethylenedioxythiophene) polymerized and stabilized in
the presence of polystyrenesulfonate (best known as PEDOT: PSS) is a working horse of …
the presence of polystyrenesulfonate (best known as PEDOT: PSS) is a working horse of …