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Optical tweezers in single-molecule biophysics
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …
studies. In this Primer, we first review the physical principles of optical tweezers and the …
Causes and consequences of RNA polymerase II stalling during transcript elongation
The journey of RNA polymerase II (Pol II) as it transcribes a gene is anything but a smooth
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …
A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery
In prokaryotes, translation can occur on mRNA that is being transcribed in a process called
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …
Etoposide promotes DNA loop trap** and barrier formation by topoisomerase II
Etoposide is a broadly employed chemotherapeutic and eukaryotic topoisomerase II poison
that stabilizes cleaved DNA intermediates to promote DNA breakage and cytotoxicity. How …
that stabilizes cleaved DNA intermediates to promote DNA breakage and cytotoxicity. How …
Optical trap**
Since their invention just over 20 years ago, optical traps have emerged as a powerful tool
with broad-reaching applications in biology and physics. Capabilities have evolved from …
with broad-reaching applications in biology and physics. Capabilities have evolved from …
Direct observation of base-pair step** by RNA polymerase
During transcription, RNA polymerase (RNAP) moves processively along a DNA template,
creating a complementary RNA. Here we present the development of an ultra-stable optical …
creating a complementary RNA. Here we present the development of an ultra-stable optical …
Transcription under torsion
J Ma, L Bai, MD Wang - Science, 2013 - science.org
In cells, RNA polymerase (RNAP) must transcribe supercoiled DNA, whose torsional state is
constantly changing, but how RNAP deals with DNA supercoiling remains elusive. We report …
constantly changing, but how RNAP deals with DNA supercoiling remains elusive. We report …
In vivo dynamics of RNA polymerase II transcription
We imaged transcription in living cells using a locus-specific reporter system, which allowed
precise, single-cell kinetic measurements of promoter binding, initiation and elongation …
precise, single-cell kinetic measurements of promoter binding, initiation and elongation …
Single-molecule experiments in biological physics: methods and applications
F Ritort - Journal of Physics: Condensed Matter, 2006 - iopscience.iop.org
I review single-molecule experiments (SMEs) in biological physics. Recent technological
developments have provided the tools to design and build scientific instruments of high …
developments have provided the tools to design and build scientific instruments of high …
High-resolution, single-molecule measurements of biomolecular motion
Many biologically important macromolecules undergo motions that are essential to their
function. Biophysical techniques can now resolve the motions of single molecules down to …
function. Biophysical techniques can now resolve the motions of single molecules down to …