ProtTest-HPC: fast selection of best-fit models of protein evolution

D Darriba, GL Taboada, R Doallo, D Posada - Euro-Par 2010 Parallel …, 2011 - Springer
The use of probabilistic models of amino acid replacement is essential for the study of
protein evolution, and programs like ProtTest implement different strategies to identify the …

A survey of parallel programming models and tools in the multi and many-core era

J Diaz, C Munoz-Caro, A Nino - IEEE Transactions on parallel …, 2012 - ieeexplore.ieee.org
In this work, we present a survey of the different parallel programming models and tools
available today with special consideration to their suitability for high-performance …

Parallel and distributed dimensionality reduction of hyperspectral data on cloud computing architectures

Z Wu, Y Li, A Plaza, J Li, F **ao… - IEEE Journal of Selected …, 2016 - ieeexplore.ieee.org
Cloud computing offers the possibility to store and process massive amounts of remotely
sensed hyperspectral data in a distributed way. Dimensionality reduction is an important …

Real-time contingency analysis with corrective transmission switching

X Li, P Balasubramanian… - … on Power Systems, 2016 - ieeexplore.ieee.org
Transmission switching (TS) has gained significant attention recently. However, barriers still
remain and must be overcome before the technology can be adopted by the industry. The …

A provenance-based adaptive scheduling heuristic for parallel scientific workflows in clouds

D de Oliveira, KACS Ocaña, F Baião… - Journal of grid …, 2012 - Springer
In the last years, scientific workflows have emerged as a fundamental abstraction for
structuring and executing scientific experiments in computational environments. Scientific …

Java in the high performance computing arena: Research, practice and experience

GL Taboada, S Ramos, RR Expósito, J Tourino… - Science of Computer …, 2013 - Elsevier
The rising interest in Java for High Performance Computing (HPC) is based on the
appealing features of this language for programming multi-core cluster architectures …

[SÁCH][B] Modeling and simulation of complex systems: A framework for efficient agent-based modeling and simulation

R Siegfried - 2014 - books.google.com
Robert Siegfried presents a framework for efficient agent-based modeling and simulation of
complex systems. He compares different approaches for describing structure and dynamics …

Chiron: a parallel engine for algebraic scientific workflows

E Ogasawara, J Dias, V Silva, F Chirigati… - Concurrency and …, 2013 - Wiley Online Library
Large‐scale scientific experiments based on computer simulations are typically modeled as
scientific workflows, which eases the chaining of different programs. These scientific …

Java for high performance computing: assessment of current research and practice

GL Taboada, J Touriño, R Doallo - … of the 7th International Conference on …, 2009 - dl.acm.org
The rising interest in Java for High Performance Computing (HPC) is based on the
appealing features of this language for programming multi-core cluster architectures …

PATRIC: A high performance parallel urban transport simulation framework based on traffic clustering

L Wan, G Yin, J Wang, G Ben-Dor, A Ogulenko… - … modelling practice and …, 2023 - Elsevier
Parallel traffic simulation requires partitioning the road network into several components that
can be assigned to different computing nodes (CPNs). Existing studies focus more on …