Horizontal gene transfer in evolution: facts and challenges

L Boto - Proceedings of the Royal Society B: Biological …, 2010 - royalsocietypublishing.org
The contribution of horizontal gene transfer to evolution has been controversial since it was
suggested to be a force driving evolution in the microbial world. In this paper, I review the …

Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria

B Gao, RS Gupta - Microbiology and molecular biology reviews, 2012 - journals.asm.org
The phylum Actinobacteria harbors many important human pathogens and also provides
one of the richest sources of natural products, including numerous antibiotics and other …

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

M Gerdol, R Moreira, F Cruz, J Gómez-Garrido… - Genome biology, 2020 - Springer
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …

Rates of lateral gene transfer in prokaryotes: high but why?

M Vos, MC Hesselman, TA Te Beek… - Trends in …, 2015 - cell.com
Lateral gene transfer is of fundamental importance to the evolution of prokaryote genomes
and has important practical consequences, as evidenced by the rapid dissemination of …

Ecosystem-specific selection pressures revealed through comparative population genomics

ML Coleman, SW Chisholm - Proceedings of the National Academy of …, 2010 - pnas.org
Bacterial populations harbor vast genetic diversity that is continually shaped by abiotic and
biotic selective pressures, as well as by neutral processes. Individuals coexisting in the …

Deletional bias across the three domains of life

CH Kuo, H Ochman - Genome biology and evolution, 2009 - academic.oup.com
Elevated levels of genetic drift are hypothesized to be a dominant factor that influences
genome size evolution across all life-forms. However, increased levels of drift appear to be …

Winding paths to simplicity: genome evolution in facultative insect symbionts

WS Lo, YY Huang, CH Kuo - FEMS Microbiology Reviews, 2016 - academic.oup.com
Symbiosis between organisms is an important driving force in evolution. Among the diverse
relationships described, extensive progress has been made in insect–bacteria symbiosis …

Lateral Gene Transfer Dynamics in the Ancient Bacterial Genus Streptomyces

BR McDonald, CR Currie - MBio, 2017 - journals.asm.org
Lateral gene transfer (LGT) profoundly shapes the evolution of bacterial lineages. LGT
across disparate phylogenetic groups and genome content diversity between related …

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

VJ Denef, LH Kalnejais, RS Mueller, P Wilmes… - Proceedings of the …, 2010 - pnas.org
Bacterial species concepts are controversial. More widely accepted is the need to
understand how differences in gene content and sequence lead to ecological divergence …

Horizontal gene transfers in mycoplasmas (Mollicutes)

C Citti, E Dordet-Frisoni, LX Nouvel, CH Kuo… - Current issues in …, 2018 - mdpi.com
The class Mollicutes (trivial name" mycoplasma") is composed of wall-less bacteria with
reduced genomes whose evolution was long thought to be only driven by gene losses …