Deep reticulation: the long legacy of hybridization in vascular plant evolution
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …
but, until recently, our understanding of its phylogenetic distribution and biological …
Green giant—a tiny chloroplast genome with mighty power to produce high‐value proteins: history and phylogeny
Free‐living cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …
Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungusfusariumare nonorthologous
K O'Donnell, E Cigelnik - Molecular phylogenetics and evolution, 1997 - Elsevier
The evolutionary history of the phytopathogenicGibberella fujikuroicomplex ofFusariumand
related species was investigated by cladistic analysis of DNA sequences obtained from …
related species was investigated by cladistic analysis of DNA sequences obtained from …
Gene trees in species trees
WP Maddison - Systematic biology, 1997 - academic.oup.com
Exploration of the relationship between gene trees and their containing species trees leads
to consideration of how to reconstruct species trees from gene trees and of the concept of …
to consideration of how to reconstruct species trees from gene trees and of the concept of …
[PDF][PDF] macclade
This book is both a manual for the computer program MacClade, describing its features and
potential uses, as well as a portrayal of a phylogenetic approach to studying diversity and …
potential uses, as well as a portrayal of a phylogenetic approach to studying diversity and …
Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny
The internal transcribed spacer (ITS) region of 18S-26S nuclear ribosomal DNA (nrDNA)
has proven to be a useful source of characters for phylogenetic studies in many angiosperm …
has proven to be a useful source of characters for phylogenetic studies in many angiosperm …
Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences
SA Rehner, GJ Samuels - Mycological Research, 1994 - Elsevier
The phylogenetic distribution of Gliocladium within the Hypocreales was investigated by
parsimony analysis of partial sequences from the nuclear large subunit ribosomal DNA (28S …
parsimony analysis of partial sequences from the nuclear large subunit ribosomal DNA (28S …
Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA
▪ Abstract Many uses of gene trees implicitly assume that nominal species are monophyletic
in their alleles at the study locus. However, in well-sampled gene trees, certain alleles in one …
in their alleles at the study locus. However, in well-sampled gene trees, certain alleles in one …
Ribosomal ITS sequences and plant phylogenetic inference
One of the most popular sequences for phylogenetic inference at the generic and
infrageneric levels in plants is the internal transcribed spacer (ITS) region of the 18S–5.8 S …
infrageneric levels in plants is the internal transcribed spacer (ITS) region of the 18S–5.8 S …