Algae as nutritional and functional food sources: revisiting our understanding
Global demand for macroalgal and microalgal foods is growing, and algae are increasingly
being consumed for functional benefits beyond the traditional considerations of nutrition and …
being consumed for functional benefits beyond the traditional considerations of nutrition and …
Horizontal gene transfer: building the web of life
Horizontal gene transfer (HGT) is the sharing of genetic material between organisms that are
not in a parent–offspring relationship. HGT is a widely recognized mechanism for adaptation …
not in a parent–offspring relationship. HGT is a widely recognized mechanism for adaptation …
BPGA-an ultra-fast pan-genome analysis pipeline
Recent advances in ultra-high-throughput sequencing technology and metagenomics have
led to a paradigm shift in microbial genomics from few genome comparisons to large-scale …
led to a paradigm shift in microbial genomics from few genome comparisons to large-scale …
The ecology and evolution of pangenomes
Since the first genome-scale comparisons, it has been evident that the genomes of many
species are unbound by strict vertical descent: Large differences in gene content can occur …
species are unbound by strict vertical descent: Large differences in gene content can occur …
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
[HTML][HTML] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through …
Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and
inadequate to address important questions about their biology, evolution, and ecology; this …
inadequate to address important questions about their biology, evolution, and ecology; this …
Why prokaryotes have pangenomes
The existence of large amounts of within-species genome content variability is puzzling.
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …
Pangenomics comes of age: from bacteria to plant and animal applications
The pangenome refers to a collection of genomic sequence found in the entire species or
population rather than in a single individual; the sequence can be core, present in all …
population rather than in a single individual; the sequence can be core, present in all …
PhycoCosm, a comparative algal genomics resource
IV Grigoriev, RD Hayes, S Calhoun… - Nucleic acids …, 2021 - academic.oup.com
Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all
eukaryotic lineages of life and collectively responsible for∼ 50% of photosynthesis on Earth …
eukaryotic lineages of life and collectively responsible for∼ 50% of photosynthesis on Earth …
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
Wild relatives of crops are an important source of genetic diversity for agriculture, but their
gene repertoire remains largely unexplored. We report the establishment and analysis of a …
gene repertoire remains largely unexplored. We report the establishment and analysis of a …