Algae as nutritional and functional food sources: revisiting our understanding

ML Wells, P Potin, JS Craigie, JA Raven… - Journal of applied …, 2017 - Springer
Global demand for macroalgal and microalgal foods is growing, and algae are increasingly
being consumed for functional benefits beyond the traditional considerations of nutrition and …

Horizontal gene transfer: building the web of life

SM Soucy, J Huang, JP Gogarten - Nature Reviews Genetics, 2015 - nature.com
Horizontal gene transfer (HGT) is the sharing of genetic material between organisms that are
not in a parent–offspring relationship. HGT is a widely recognized mechanism for adaptation …

BPGA-an ultra-fast pan-genome analysis pipeline

NM Chaudhari, VK Gupta, C Dutta - Scientific reports, 2016 - nature.com
Recent advances in ultra-high-throughput sequencing technology and metagenomics have
led to a paradigm shift in microbial genomics from few genome comparisons to large-scale …

The ecology and evolution of pangenomes

MA Brockhurst, E Harrison, JPJ Hall, T Richards… - Current Biology, 2019 - cell.com
Since the first genome-scale comparisons, it has been evident that the genomes of many
species are unbound by strict vertical descent: Large differences in gene content can occur …

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

M Gerdol, R Moreira, F Cruz, J Gómez-Garrido… - Genome biology, 2020 - Springer
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …

[HTML][HTML] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through …

PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen… - PLoS …, 2014 - journals.plos.org
Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and
inadequate to address important questions about their biology, evolution, and ecology; this …

Why prokaryotes have pangenomes

JO McInerney, A McNally, MJ O'connell - Nature microbiology, 2017 - nature.com
The existence of large amounts of within-species genome content variability is puzzling.
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …

Pangenomics comes of age: from bacteria to plant and animal applications

AA Golicz, PE Bayer, PL Bhalla, J Batley, D Edwards - Trends in Genetics, 2020 - cell.com
The pangenome refers to a collection of genomic sequence found in the entire species or
population rather than in a single individual; the sequence can be core, present in all …

PhycoCosm, a comparative algal genomics resource

IV Grigoriev, RD Hayes, S Calhoun… - Nucleic acids …, 2021 - academic.oup.com
Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all
eukaryotic lineages of life and collectively responsible for∼ 50% of photosynthesis on Earth …

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

Y Li, G Zhou, J Ma, W Jiang, L **, Z Zhang… - Nature …, 2014 - nature.com
Wild relatives of crops are an important source of genetic diversity for agriculture, but their
gene repertoire remains largely unexplored. We report the establishment and analysis of a …