Regulation of ribosomal RNA gene copy number, transcription and nucleolus organization in eukaryotes

Y Hori, C Engel, T Kobayashi - Nature reviews Molecular cell biology, 2023 - nature.com
One of the first biological machineries to be created seems to have been the ribosome.
Since then, organisms have dedicated great efforts to optimize this apparatus. The …

Life as a guide to its own origins

SA Harrison, H Rammu, F Liu, A Halpern… - Annual Review of …, 2023 - annualreviews.org
The origin of life entails a continuum from simple prebiotic chemistry to cells with genes and
molecular machines. Using life as a guide to this continuum, we consider how selection …

Origin-of-life Molecules in the Atmosphere after Big Impacts on the Early Earth

NF Wogan, DC Catling, KJ Zahnle… - The Planetary Science …, 2023 - iopscience.iop.org
The origin of life on Earth would benefit from a prebiotic atmosphere that produced nitriles,
like HCN, which enable ribonucleotide synthesis. However, geochemical evidence suggests …

There's plenty of room right here: Biological systems as evolved, overloaded, multi-scale machines

J Bongard, M Levin - Biomimetics, 2023 - mdpi.com
The applicability of computational models to the biological world is an active topic of debate.
We argue that a useful path forward results from abandoning hard boundaries between …

On the aqueous origins of the condensation polymers of life

D Whitaker, MW Powner - Nature Reviews Chemistry, 2024 - nature.com
Water is essential for life as we know it, but it has paradoxically been considered inimical to
the emergence of life. Proteins and nucleic acids have sustained evolution and life for …

Chemical antiquity in metabolism

N Mrnjavac, L Schwander, M Brabender… - Accounts of Chemical …, 2024 - ACS Publications
Conspectus Life is an exergonic chemical reaction. The same was true when the very first
cells emerged at life's origin. In order to live, all cells need a source of carbon, energy, and …

Physical non-equilibria for prebiotic nucleic acid chemistry

A Ianeselli, A Salditt, C Mast, B Ercolano… - Nature Reviews …, 2023 - nature.com
The prebiotic replication of DNA and RNA is a complex interplay between chemistry and the
environment. Factors that have direct and indirect effects on prebiotic chemistry include …

A self-sustaining serpentinization mega-engine feeds the fougerite nanoengines implicated in the emergence of guided metabolism

MJ Russell - Frontiers in Microbiology, 2023 - frontiersin.org
The demonstration by Ivan Barnes et al. that the serpentinization of fresh Alpine-type
ultramafic rocks results in the exhalation of hot alkaline fluids is foundational to the …

On the evolutionary history of the twenty encoded amino acids

A Kirschning - Chemistry–A European Journal, 2022 - Wiley Online Library
Abstract α‐Amino acids are essential molecular constituents of life, twenty of which are
privileged because they are encoded by the ribosomal machinery. The question remains …

tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data

HT Lei, ZH Wang, B Li, Y Sun, SQ Mei… - Nucleic Acids …, 2023 - academic.oup.com
Abstract tRNA molecules contain dense, abundant modifications that affect tRNA structure,
stability, mRNA decoding and tsRNA formation. tRNA modifications and related enzymes …