The normalcy of dormancy: common themes in microbial quiescence

ESC Rittershaus, SH Baek, CM Sassetti - Cell host & microbe, 2013 - cell.com
All microorganisms are exposed to periodic stresses that inhibit growth. Many bacteria and
fungi weather these periods by entering a hardy, nonreplicating state, often termed …

Metabolic networks in motion: 13C‐based flux analysis

U Sauer - Molecular systems biology, 2006 - embopress.org
Many properties of complex networks cannot be understood from monitoring the
components—not even when comprehensively monitoring all protein or metabolite …

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements

D Davidi, E Noor, W Liebermeister, A Bar-Even… - Proceedings of the …, 2016 - pnas.org
Turnover numbers, also known as k cat values, are fundamental properties of enzymes.
However, k cat data are scarce and measured in vitro, thus may not faithfully represent the in …

Sortilin is essential for proNGF-induced neuronal cell death

A Nykjaer, R Lee, KK Teng, P Jansen, P Madsen… - Nature, 2004 - nature.com
Sortilin (∼ 95 kDa) is a member of the recently discovered family of Vps10p-domain
receptors,, and is expressed in a variety of tissues, notably brain, spinal cord and muscle. It …

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

JS Edwards, RU Ibarra, BO Palsson - Nature biotechnology, 2001 - nature.com
A significant goal in the post-genome era is to relate the annotated genome sequence to the
physiological functions of a cell. Working from the annotated genome sequence, as well as …

The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli

U Sauer, F Canonaco, S Heri, A Perrenoud… - Journal of Biological …, 2004 - jbc.org
Pentose phosphate pathway and isocitrate dehydrogenase are generally considered to be
the major sources of the anabolic reductant NADPH. As one of very few microbes …

The PEP—pyruvate—oxaloacetate node as the switch point for carbon flux distribution in bacteria: We dedicate this paper to Rudolf K. Thauer, Director of the Max …

U Sauer, BJ Eikmanns - FEMS microbiology reviews, 2005 - academic.oup.com
In many organisms, metabolite interconversion at the phosphoenolpyruvate (PEP)–pyruvate–
oxaloacetate node involves a structurally entangled set of reactions that interconnects the …

Metabolomics of Mycobacterium tuberculosis reveals compartmentalized co-catabolism of carbon substrates

LPS de Carvalho, SM Fischer, J Marrero, C Nathan… - Chemistry & biology, 2010 - cell.com
Metabolic adaptation to the host environment is a defining feature of the pathogenicity of
Mycobacterium tuberculosis (Mtb), but we lack biochemical knowledge of its metabolic …

Dynamic modeling of the central carbon metabolism of Escherichia coli

C Chassagnole, N Noisommit‐Rizzi… - Biotechnology and …, 2002 - Wiley Online Library
Application of metabolic engineering principles to the rational design of microbial production
processes crucially depends on the ability to describe quantitatively the systemic behavior of …

Global organization of metabolic fluxes in the bacterium Escherichia coli

E Almaas, B Kovács, T Vicsek, ZN Oltvai, AL Barabási - Nature, 2004 - nature.com
Cellular metabolism, the integrated interconversion of thousands of metabolic substrates
through enzyme-catalysed biochemical reactions, is the most investigated complex …