Federated learning review: Fundamentals, enabling technologies, and future applications

S Banabilah, M Aloqaily, E Alsayed, N Malik… - Information processing & …, 2022 - Elsevier
Federated Learning (FL) has been foundational in improving the performance of a wide
range of applications since it was first introduced by Google. Some of the most prominent …

Efficient data reconstruction: The bottleneck of large-scale application of DNA storage

B Cao, Y Zheng, Q Shao, Z Liu, L **e, Y Zhao, B Wang… - Cell Reports, 2024 - cell.com
Over the past decade, the rapid development of DNA synthesis and sequencing
technologies has enabled preliminary use of DNA molecules for digital data storage …

Accurately clustering biological sequences in linear time by relatedness sorting

E Wright - Nature Communications, 2024 - nature.com
Clustering biological sequences into similar groups is an increasingly important task as the
number of available sequences continues to grow exponentially. Search-based approaches …

Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate

M Abrouk, HI Ahmed, P Cubry, D Šimoníková… - Nature …, 2020 - nature.com
Sustainable food production in the context of climate change necessitates diversification of
agriculture and a more efficient utilization of plant genetic resources. Fonio millet (Digitaria …

Review of Hepatitis E Virus in Rats: Evident Risk of Species Orthohepevirus C to Human Zoonotic Infection and Disease

G Reuter, Á Boros, P Pankovics - Viruses, 2020 - mdpi.com
Hepatitis E virus (HEV)(family Hepeviridae) is one of the most common human pathogens,
causing acute hepatitis and an increasingly recognized etiological agent in chronic hepatitis …

Clover: tree structure-based efficient DNA clustering for DNA-based data storage

G Qu, Z Yan, H Wu - Briefings in Bioinformatics, 2022 - academic.oup.com
Deoxyribonucleic acid (DNA)-based data storage is a promising new storage technology
which has the advantage of high storage capacity and long storage time compared with …

Best practices in designing, sequencing, and identifying random DNA barcodes

MS Johnson, S Venkataram, S Kryazhimskiy - Journal of molecular …, 2023 - Springer
Random DNA barcodes are a versatile tool for tracking cell lineages, with applications
ranging from development to cancer to evolution. Here, we review and critically evaluate …

DeLUCS: Deep learning for unsupervised clustering of DNA sequences

P Millán Arias, F Alipour, KA Hill, L Kari - Plos one, 2022 - journals.plos.org
We present a novel De ep L earning method for the U nsupervised C lustering of DNA S
equences (DeLUCS) that does not require sequence alignment, sequence homology, or …

Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems

A Rubio, M Sprang, A Garzón, A Moreno-Rodriguez… - Science …, 2023 - science.org
CRISPR-Cas systems are prokaryotic acquired immunity mechanisms, which are found in
40% of bacterial genomes. They prevent viral infections through small DNA fragments called …

MeShClust v3. 0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores

HZ Girgis - BMC genomics, 2022 - Springer
Background Tools for accurately clustering biological sequences are among the most
important tools in computational biology. Two pioneering tools for clustering sequences are …