25 years of the IPD‐IMGT/HLA D atabase

J Robinson, DJ Barker, SGE Marsh - Hla, 2024 - Wiley Online Library
Twenty‐five years ago, in 1998, the HLA Informatics Group of the Anthony Nolan Research
Institute released the IMGT/HLA Database. Since this time, this online resource has acted as …

A new flow path: eDNA connecting hydrology and biology

DR URycki, AA Kirtane, R Aronoff… - Wiley …, 2024 - Wiley Online Library
Environmental DNA (eDNA) has revolutionized ecological research, particularly for
biodiversity assessment in various environments, most notably aquatic media …

GenBank 2024 update

EW Sayers, M Cavanaugh, K Clark… - Nucleic Acids …, 2024 - academic.oup.com
Abstract GenBank®(https://www. ncbi. nlm. nih. gov/genbank/) is a comprehensive, public
database that contains 25 trillion base pairs from over 3.7 billion nucleotide sequences for …

MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component

VM Gumerov, LE Ulrich, IB Zhulin - Nucleic Acids Research, 2024 - academic.oup.com
Signal transduction systems in bacteria and archaea link environmental stimuli to specific
adaptive cellular responses. They control gene expression, motility, biofilm formation …

CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning

G Serna García, R Al Khalaf, F Invernici, S Ceri… - …, 2023 - academic.oup.com
Abstract Background Literature about SARS-CoV-2 widely discusses the effects of variations
that have spread in the past 3 years. Such information is dispersed in the texts of several …

GenBase: A Nucleotide Sequence Database

C Bu, X Zheng, X Zhao, T Xu, X Bai, Y Jia… - Genomics …, 2024 - academic.oup.com
The rapid advancement of sequencing technologies poses challenges in managing the
large volume and exponential growth of sequence data efficiently and on time. To address …

SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models

S Cosentino, S Sriswasdi, W Iwasaki - Genome Biology, 2024 - Springer
Accurate inference of orthologous genes constitutes a prerequisite for comparative and
evolutionary genomics. SonicParanoid is one of the fastest tools for orthology inference; …

Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development

N Pavlova, M Traykovska, R Penchovsky - Antibiotics, 2023 - mdpi.com
Antimicrobial drug resistance has emerged as a significant challenge in contemporary
medicine due to the proliferation of numerous bacterial strains resistant to all existing …

A comprehensive dataset of animal-associated sarbecoviruses

B Liu, P Zhao, P Xu, Y Han, Y Wang, L Chen, Z Wu… - Scientific Data, 2023 - nature.com
Zoonotic spillover of sarbecoviruses (SarbeCoVs) from non-human animals to humans
under natural conditions has led to two large-scale pandemics, the severe acute respiratory …

[HTML][HTML] How Trustworthy Are the Genomic Sequences of SARS-CoV-2 in GenBank?

X **a - Microorganisms, 2024 - mdpi.com
Well-annotated gene and genomic sequences serve as a foundation for making inferences
in molecular biology and evolution and can directly impact public health. The first SARS …