CHARMM at 45: Enhancements in accessibility, functionality, and speed

W Hwang, SL Austin, A Blondel… - The Journal of …, 2024 - ACS Publications
Since its inception nearly a half century ago, CHARMM has been playing a central role in
computational biochemistry and biophysics. Commensurate with the developments in …

Ligand diffusion in globins: simulations versus experiment

R Elber - Current opinion in structural biology, 2010 - Elsevier
Computer simulations in molecular biophysics describe in atomic detail the structure,
dynamics, and function of biological macromolecules. To assess the quality of these models …

Effect of temperature on gas adsorption and separation in ZIF-8: A combined experimental and molecular simulation study

H Huang, W Zhang, D Liu, B Liu, G Chen… - Chemical engineering …, 2011 - Elsevier
In this work, the effect of temperature on adsorption of CO2, CH4, CO, and N2 and
separation of their binary mixtures in ZIF-8 were investigated using experimental …

Large-Scale Computational Screening of Metal Organic Framework (MOF) Membranes and MOF-Based Polymer Membranes for H2/N2 Separations

ANV Azar, S Velioglu, S Keskin - ACS sustainable chemistry & …, 2019 - ACS Publications
Several thousands of metal organic frameworks (MOFs) have been reported to date, but the
information on H2/N2 separation performances of MOF membranes is currently very limited …

Crystal structure of photolysed carbonmonoxy-myoglobin

I Schlichting, J Berendzen, GN Phillips Jr, RM Sweet - Nature, 1994 - nature.com
MYOGLOBIN is a globular haem protein that reversibly binds lig-ands such as O2 and CO.
Single photons of visible light can break the covalent bond between CO and the haem iron …

Binding of carbon monoxide to hemoglobin in an oxygen environment: force field development for molecular dynamics

M Jiang, CH Yu, Z Xu, Z Qin - Journal of Chemical Theory and …, 2024 - ACS Publications
Carbon monoxide (CO) is a byproduct of the incomplete combustion of carbon-based fuels,
such as wood, coal, gasoline, or natural gas. As incomplete combustion in a fire accident or …

Liquid-phase effects on adsorption processes in heterogeneous catalysis

M Zare, MS Saleheen, N Singh, MJ Uline, M Faheem… - JACS Au, 2022 - ACS Publications
Aqueous solvation free energies of adsorption have recently been measured for phenol
adsorption on Pt (111). Endergonic solvent effects of∼ 1 eV suggest solvents dramatically …

Gas adsorption and separation by the Al-based metal–organic framework MIL-160

D Damasceno Borges, P Normand… - The Journal of …, 2017 - ACS Publications
One of the most promising technologies, with a low energy penalty, for CO2 capture from
diverse gas mixtures is based on the adsorption process using adsorbents. Many efforts are …

Ultrafast rotation and trap** of carbon monoxide dissociated from myoglobin

M Lim, TA Jackson, PA Anfinrud - Nature structural biology, 1997 - nature.com
The nature of ligand motion within proteins has been investigated by measuring
femtosecond time-resolved infrared (IR) spectra of CO photodissociated from the haem of …

Adsorption and separation of binary mixtures in a metal-organic framework Cu-BTC: A computational study

S Wang, Q Yang, C Zhong - Separation and purification technology, 2008 - Elsevier
Grand canonical Monte Carlo simulations were conducted to systematically evaluate the
adsorption separation of three binary mixtures, CO2/CO, C2H4/CO2, and C2H4/C2H6, in a …