A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease
Kidney stone disease causes significant morbidity and increases health care utilization. In
this work, we decipher the cellular and molecular niche of the human renal papilla in …
this work, we decipher the cellular and molecular niche of the human renal papilla in …
Spatial transcriptomics in health and disease
S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …
types in a tissue is a powerful approach to understand the cellular and spatial organization …
Spatiotemporal immune atlas of a clinical-grade gene-edited pig-to-human kidney xenotransplant
MD Cheung, R Asiimwe, EN Erman, CF Fucile… - Nature …, 2024 - nature.com
Pig-to-human xenotransplantation is rapidly approaching the clinical arena; however, it is
unclear which immunomodulatory regimens will effectively control human immune …
unclear which immunomodulatory regimens will effectively control human immune …
3d ground truth annotations of nuclei in 3d microscopy volumes
In this paper we describe a set of 3D microscopy volumes we have partially manually
annotated. We describe the volumes annotated and the tools and processes we use to …
annotated. We describe the volumes annotated and the tools and processes we use to …
Acute kidney injury results in long-term alterations of kidney lymphatics in mice
G Ghajar-Rahimi, D Barwinska… - American Journal …, 2024 - journals.physiology.org
The long-term effects of a single episode of acute kidney injury (AKI) induced by bilateral
ischemia-reperfusion injury (BIRI) on kidney lymphatic dynamics are not known. The …
ischemia-reperfusion injury (BIRI) on kidney lymphatic dynamics are not known. The …
High-throughput image analysis with deep learning captures heterogeneity and spatial relationships after kidney injury
MC McElliott, A Al-Suraimi, AC Telang… - Scientific Reports, 2023 - nature.com
Recovery from acute kidney injury can vary widely in patients and in animal models.
Immunofluorescence staining can provide spatial information about heterogeneous injury …
Immunofluorescence staining can provide spatial information about heterogeneous injury …
Two distinct phenotypes of calcium oxalate stone formers could imply different long-term risks for renal function
JC Williams Jr, WS Bowen, JE Lingeman, M Rivera… - Urolithiasis, 2024 - Springer
Endoscopic and biopsy findings have identified two distinct phenotypes among individuals
with calcium oxalate (CaOx) kidney stones. The first type has normal renal papillae but …
with calcium oxalate (CaOx) kidney stones. The first type has normal renal papillae but …
Defining protein expression in the kidney at large scale: from antibody validation to cytometry analysis
AR Sabo, S Winfree… - American Journal of …, 2023 - journals.physiology.org
The kidney is a complex organ and a key regulator of homeostasis. It comprises various
functional units (nephrons, vasculature, and interstitium) that are organized spatially, so that …
functional units (nephrons, vasculature, and interstitium) that are organized spatially, so that …
Tissue cytometry with machine learning in kidney: From small specimens to big data
TM El-Achkar, S Winfree, N Talukder… - Frontiers in …, 2022 - frontiersin.org
Advances in cellular and molecular interrogation of kidney tissue have ushered a new era of
understanding the pathogenesis of kidney disease and potentially identifying molecular …
understanding the pathogenesis of kidney disease and potentially identifying molecular …
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury and matrix remodeling in patients with stone disease
VH Canela, WS Bowen, RM Ferreira, JE Lingeman… - bioRxiv, 2022 - biorxiv.org
Kidney stone disease causes significant morbidity and increases health care utilization. The
pathogenesis of stone disease is not completely understood, due in part to the poor …
pathogenesis of stone disease is not completely understood, due in part to the poor …