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Describing genomic and epigenomic traits underpinning emerging fungal pathogens
An unprecedented number of pathogenic fungi are emerging and causing disease in
animals and plants, putting the resilience of wild and managed ecosystems in jeopardy …
animals and plants, putting the resilience of wild and managed ecosystems in jeopardy …
Studying natural selection in the era of ubiquitous genomes
TB Sackton - Trends in Genetics, 2020 - cell.com
A major goal of comparative genomics research is modeling changes in DNA sequences
between species to understand the evolutionary forces acting on species differences …
between species to understand the evolutionary forces acting on species differences …
Neutral theory and the somatic evolution of cancer
Kimura's neutral theory argued that positive selection was not responsible for an
appreciable fraction of molecular substitutions. Correspondingly, quantitative analysis …
appreciable fraction of molecular substitutions. Correspondingly, quantitative analysis …
Rapid divergence of a gamete recognition gene promoted macroevolution of Eutheria
Background Speciation genes contribute disproportionately to species divergence, but few
examples exist, especially in vertebrates. Here we test whether Zan, which encodes the …
examples exist, especially in vertebrates. Here we test whether Zan, which encodes the …
[HTML][HTML] Gamete recognition gene divergence yields a robust Eutherian phylogeny across taxonomic levels
EK Roberts, EA Wright, AE Worsham, DM Hardy… - Diversity, 2023 - mdpi.com
The extraordinary morphological diversity among extant mammals poses a challenge for
studies of speciation, adaptation, molecular evolution, and reproductive isolation. Despite …
studies of speciation, adaptation, molecular evolution, and reproductive isolation. Despite …
[HTML][HTML] Convergent evolution as an indicator for selection during acute HIV-1 infection
F Bertels, KJ Metzner… - Peer Community …, 2021 - peercommunityjournal.org
Convergent evolution describes the process of different populations acquiring similar
phenotypes or genotypes. Complex organisms with large genomes only rarely and only …
phenotypes or genotypes. Complex organisms with large genomes only rarely and only …
Orphan genes are clustered with allorecognition loci and may be involved in incompatibility and speciation in Neurospora
As de novo elements of the genome, orphan genes have long been postulated to play roles
in the establishment of genetic barriers to intercrossing and speciation. However, there is a …
in the establishment of genetic barriers to intercrossing and speciation. However, there is a …
Genome-wide features of introns are evolutionary decoupled among themselves and from genome size throughout Eukarya
The impact of spliceosomal introns on genome and organismal evolution remains puzzling.
Here, we investigated the correlative associations among genome-wide features of introns …
Here, we investigated the correlative associations among genome-wide features of introns …
Purifying selection and adaptive evolution proximate to the zoonosis of SARS-CoV-1 and SARS-CoV-2
Over the past two decades the pace of spillovers from animal viruses to humans has
accelerated, with COVID-19 becoming the most deadly zoonotic disease in living memory …
accelerated, with COVID-19 becoming the most deadly zoonotic disease in living memory …
Polaris: Polarization of ancestral and derived polymorphic alleles for inferences of extended haplotype homozygosity in human populations.
A Lisi, MC Campbell - bioRxiv, 2024 - biorxiv.org
Statistical methods that measure the extent of haplotype homozygosity on chromosomes
have been highly informative for identifying episodes of recent selection. For example, the …
have been highly informative for identifying episodes of recent selection. For example, the …