Application of proteomics in cancer: recent trends and approaches for biomarkers discovery
YW Kwon, HS Jo, S Bae, Y Seo, P Song, M Song… - Frontiers in …, 2021 - frontiersin.org
Proteomics has become an important field in molecular sciences, as it provides valuable
information on the identity, expression levels, and modification of proteins. For example …
information on the identity, expression levels, and modification of proteins. For example …
The emerging landscape of single-molecule protein sequencing technologies
Single-cell profiling methods have had a profound impact on the understanding of cellular
heterogeneity. While genomes and transcriptomes can be explored at the single-cell level …
heterogeneity. While genomes and transcriptomes can be explored at the single-cell level …
Global detection of human variants and isoforms by deep proteome sequencing
An average shotgun proteomics experiment detects approximately 10,000 human proteins
from a single sample. However, individual proteins are typically identified by peptide …
from a single sample. However, individual proteins are typically identified by peptide …
UniProt: the universal protein knowledgebase in 2021
Nucleic acids research, 2021 - academic.oup.com
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-
quality and freely accessible set of protein sequences annotated with functional information …
quality and freely accessible set of protein sequences annotated with functional information …
A proximity-dependent biotinylation map of a human cell
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct
biochemical processes into discrete subcellular locations. Microscopy and biochemical …
biochemical processes into discrete subcellular locations. Microscopy and biochemical …
Cancer-cell-derived GABA promotes β-catenin-mediated tumour growth and immunosuppression
Many cancers have an unusual dependence on glutamine. However, most previous studies
have focused on the contribution of glutamine to metabolic building blocks and the energy …
have focused on the contribution of glutamine to metabolic building blocks and the energy …
Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors
Medicinal chemistry has discovered thousands of potent protein and lipid kinase inhibitors.
These may be developed into therapeutic drugs or chemical probes to study kinase biology …
These may be developed into therapeutic drugs or chemical probes to study kinase biology …
Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics
R Lou, Y Cao, S Li, X Lang, Y Li, Y Zhang… - Nature …, 2023 - nature.com
A plethora of software suites and multiple classes of spectral libraries have been developed
to enhance the depth and robustness of data-independent acquisition (DIA) data …
to enhance the depth and robustness of data-independent acquisition (DIA) data …
Mining for encrypted peptide antibiotics in the human proteome
The emergence of drug-resistant bacteria calls for the discovery of new antibiotics. Yet, for
decades, traditional discovery strategies have not yielded new classes of antimicrobial …
decades, traditional discovery strategies have not yielded new classes of antimicrobial …
Meltome atlas—thermal proteome stability across the tree of life
We have used a mass spectrometry-based proteomic approach to compile an atlas of the
thermal stability of 48,000 proteins across 13 species ranging from archaea to humans and …
thermal stability of 48,000 proteins across 13 species ranging from archaea to humans and …