The ingenuity of bacterial genomes

PC Kirchberger, ML Schmidt… - Annual Review of …, 2020 - annualreviews.org
The genomes of bacteria contain fewer genes and substantially less noncoding DNA than
those of eukaryotes, and as a result, they have much less raw material to invent new traits …

Adaptive laboratory evolution of microorganisms: Methodology and application for bioproduction

T Hirasawa, T Maeda - Microorganisms, 2022 - mdpi.com
Adaptive laboratory evolution (ALE) is a useful experimental methodology for fundamental
scientific research and industrial applications to create microbial cell factories. By using ALE …

Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies

H He, PA Gómez-Coronado, J Zarzycki… - Nature …, 2024 - nature.com
Promiscuous enzymes often serve as the starting point for the evolution of novel functions.
Yet, the extent to which the promiscuity of an individual enzyme can be harnessed several …

How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation

ME Glasner, DP Truong, BC Morse - The FEBS journal, 2020 - Wiley Online Library
Promiscuity is the coincidental ability of an enzyme to catalyze its native reaction and
additional reactions that are not biological functions in the same active site. Promiscuity …

Advanced pathway engineering for phototrophic putrescine production

RA Freudenberg, L Wittemeier… - Plant Biotechnology …, 2022 - Wiley Online Library
Summary The polyamine putrescine (1, 4‐diaminobutane) contributes to cellular fitness in
most organisms, where it is derived from the amino acids ornithine or arginine. In the …

Constructing an ethanol utilization pathway in Escherichia coli to produce acetyl-CoA derived compounds

H Liang, X Ma, W Ning, Y Liu, AJ Sinskey… - Metabolic …, 2021 - Elsevier
Engineering microbes to utilize non-conventional substrates could create short and efficient
pathways to convert substrate into product. In this study, we designed and constructed a two …

Develo** a pyruvate-driven metabolic scenario for growth-coupled microbial production

J Wang, R Zhang, Y Zhang, Y Yang, Y Lin, Y Yan - Metabolic engineering, 2019 - Elsevier
Microbial-based chemical synthesis serves as a promising approach for sustainable
production of industrially important products. However, limited production performance …

Efficient Biosynthesis of Isopropanol from Ethanol by Metabolically Engineered Escherichia coli

Y Wang, J Lu, M Xu, C Qian, F Zhao… - ACS Sustainable …, 2022 - ACS Publications
Ethanol, a promising nonfood carbon source from syngas fermentation, has recently been
used in the biosynthesis of bulk chemicals in industrial biomanufacturing. In this study, the …

Emergence of oxygen‐and pyridoxal phosphate‐dependent reactions

ER Hoffarth, KW Rothchild, KS Ryan - The FEBS Journal, 2020 - Wiley Online Library
Pyridoxal 5′‐phosphate (PLP) is an organic cofactor employed by~ 4% of enzymes. The
structure of the PLP cofactor allows for the stabilization of carbanions through resonance. A …

New-to-nature CO2-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase

H Schulz-Mirbach, P Wichmann, A Satanowski… - Nature …, 2024 - nature.com
Acetyl-CoA is a key metabolic intermediate and the product of various natural and synthetic
one-carbon (C1) assimilation pathways. While an efficient conversion of acetyl-CoA into …