Functions and consequences of AID/APOBEC-mediated DNA and RNA deamination

R Pecori, S Di Giorgio, J Paulo Lorenzo… - Nature Reviews …, 2022 - nature.com
The AID/APOBEC polynucleotide cytidine deaminases have historically been classified as
either DNA mutators or RNA editors based on their first identified nucleic acid substrate …

V (D) J recombination, somatic hypermutation and class switch recombination of immunoglobulins: mechanism and regulation

X Chi, Y Li, X Qiu - Immunology, 2020 - Wiley Online Library
Immunoglobulins emerging from B lymphocytes and capable of recognizing almost all kinds
of antigens owing to the extreme diversity of their antigen‐binding portions, known as …

Evolution of an adenine base editor into a small, efficient cytosine base editor with low off-target activity

ME Neugebauer, A Hsu, M Arbab, NA Krasnow… - Nature …, 2023 - nature.com
Cytosine base editors (CBEs) are larger and can suffer from higher off-target activity or lower
on-target editing efficiency than current adenine base editors (ABEs). To develop a CBE that …

[HTML][HTML] Detection of alternative DNA structures and its implications for human disease

G Matos-Rodrigues, JA Hisey, A Nussenzweig… - Molecular cell, 2023 - cell.com
Around 3% of the genome consists of simple DNA repeats that are prone to forming
alternative (non-B) DNA structures, such as hairpins, cruciforms, triplexes (H-DNA), four …

AID in antibody diversification: there and back again

Y Feng, N Seija, JM Di Noia, A Martin - Trends in immunology, 2020 - cell.com
Activation-Induced cytidine Deaminase (AID) initiates affinity maturation and isotype
switching by deaminating deoxycytidines within immunoglobulin genes, leading to somatic …

[HTML][HTML] G-quadruplex resolution: From molecular mechanisms to physiological relevance

K Sato, P Knipscheer - DNA repair, 2023 - Elsevier
Guanine-rich DNA sequences can fold into stable four-stranded structures called G-
quadruplexes or G4s. Research in the past decade demonstrated that G4 structures are …

APOBEC-induced mutagenesis in cancer

TM Mertz, CD Collins, M Dennis… - Annual Review of …, 2022 - annualreviews.org
The initiation, progression, and relapse of cancers often result from mutations occurring
within somatic cells. Consequently, processes that elevate mutation rates accelerate …

G-quadruplex–R-loop interactions and the mechanism of anticancer G-quadruplex binders

G Miglietta, M Russo, G Capranico - Nucleic acids research, 2020 - academic.oup.com
Genomic DNA and cellular RNAs can form a variety of non-B secondary structures, including
G-quadruplex (G4) and R-loops. G4s are constituted by stacked guanine tetrads held …

RNA helicase DDX1 converts RNA G-quadruplex structures into R-loops to promote IgH class switch recombination

CR de Almeida, S Dhir, A Dhir, AE Moghaddam… - Molecular cell, 2018 - cell.com
Class switch recombination (CSR) at the immunoglobulin heavy-chain (IgH) locus is
associated with the formation of R-loop structures over switch (S) regions. While these often …