[HTML][HTML] Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey

A Aswath, A Alsahaf, BNG Giepmans… - Medical image analysis, 2023 - Elsevier
Electron microscopy (EM) enables high-resolution imaging of tissues and cells based on 2D
and 3D imaging techniques. Due to the laborious and time-consuming nature of manual …

Whole-cell organelle segmentation in volume electron microscopy

L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic… - Nature, 2021 - nature.com
Cells contain hundreds of organelles and macromolecular assemblies. Obtaining a
complete understanding of their intricate organization requires the nanometre-level, three …

How innovations in methodology offer new prospects for volume electron microscopy

AJ Kievits, R Lane, EC Carroll… - Journal of …, 2022 - Wiley Online Library
Detailed knowledge of biological structure has been key in understanding biology at several
levels of organisation, from organs to cells and proteins. Volume electron microscopy …

MitoEM dataset: large-scale 3D mitochondria instance segmentation from EM images

D Wei, Z Lin, D Franco-Barranco, N Wendt… - … Conference on Medical …, 2020 - Springer
Electron microscopy (EM) allows the identification of intracellular organelles such as
mitochondria, providing insights for clinical and scientific studies. However, public …

Adaptive template transformer for mitochondria segmentation in electron microscopy images

Y Pan, N Luo, R Sun, M Meng… - Proceedings of the …, 2023 - openaccess.thecvf.com
Mitochondria, as tiny structures within the cell, are of significant importance to study cell
functions for biological and clinical analysis. And exploring how to automatically segment …

Dualrel: Semi-supervised mitochondria segmentation from a prototype perspective

H Mai, R Sun, T Zhang, Z **ong… - Proceedings of the IEEE …, 2023 - openaccess.thecvf.com
Automatic mitochondria segmentation enjoys great popularity with the development of deep
learning. However, existing methods rely heavily on the labor-intensive manual gathering by …

Facial expression recognition for monitoring neurological disorders based on convolutional neural network

G Yolcu, I Oztel, S Kazan, C Oz, K Palaniappan… - Multimedia Tools and …, 2019 - Springer
Facial expressions are a significant part of non-verbal communication. Recognizing facial
expressions of people with neurological disorders is essential because these people may …

Automatic mitochondria segmentation for EM data using a 3D supervised convolutional network

C **ao, X Chen, W Li, L Li, L Wang, Q **e… - Frontiers in …, 2018 - frontiersin.org
Recent studies have supported the relation between mitochondrial functions and
degenerative disorders related to ageing, such as Alzheimer's and Parkinson's diseases …

Deep learning-based face analysis system for monitoring customer interest

G Yolcu, I Oztel, S Kazan, C Oz, F Bunyak - Journal of ambient intelligence …, 2020 - Springer
In marketing research, one of the most exciting, innovative, and promising trends is
quantification of customer interest. This paper presents a deep learning-based system for …

PyTorch connectomics: a scalable and flexible segmentation framework for EM connectomics

Z Lin, D Wei, J Lichtman, H Pfister - arxiv preprint arxiv:2112.05754, 2021 - arxiv.org
We present PyTorch Connectomics (PyTC), an open-source deep-learning framework for
the semantic and instance segmentation of volumetric microscopy images, built upon …