A perspective on explanations of molecular prediction models

GP Wellawatte, HA Gandhi, A Seshadri… - Journal of Chemical …, 2023 - ACS Publications
Chemists can be skeptical in using deep learning (DL) in decision making, due to the lack of
interpretability in “black-box” models. Explainable artificial intelligence (XAI) is a branch of …

Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science

I Saifi, BA Bhat, SS Hamdani, UY Bhat… - Journal of …, 2024 - Taylor & Francis
In the ever-evolving field of drug discovery, the integration of Artificial Intelligence (AI) and
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …

XSMILES: interactive visualization for molecules, SMILES and XAI attribution scores

H Heberle, L Zhao, S Schmidt, T Wolf… - Journal of …, 2023 - Springer
Background Explainable artificial intelligence (XAI) methods have shown increasing
applicability in chemistry. In this context, visualization techniques can highlight regions of a …

Democratizing cheminformatics: interpretable chemical grou** using an automated KNIME workflow

JT Moreira-Filho, D Ranganath, M Conway… - Journal of …, 2024 - Springer
With the increased availability of chemical data in public databases, innovative techniques
and algorithms have emerged for the analysis, exploration, visualization, and extraction of …

Where developmental toxicity meets explainable artificial intelligence: state-of-the-art and perspectives

M Vittoria Togo, F Mastrolorito, A Orfino… - Expert Opinion on …, 2024 - Taylor & Francis
ABSTRACT Introduction The application of Artificial Intelligence (AI) to predictive toxicology
is rapidly increasing, particularly aiming to develop non-testing methods that effectively …

[HTML][HTML] Recent Applications of Explainable AI (XAI): A Systematic Literature Review

M Saarela, V Podgorelec - Applied Sciences, 2024 - mdpi.com
This systematic literature review employs the Preferred Reporting Items for Systematic
Reviews and Meta-Analyses (PRISMA) methodology to investigate recent applications of …

Can we predict clinical pharmacokinetics of highly lipophilic compounds by integration of machine learning or in vitro data into physiologically based models? A …

N Parrott, N Manevski… - Molecular …, 2022 - ACS Publications
While high lipophilicity tends to improve potency, its effects on pharmacokinetics (PK) are
complex and often unfavorable. To predict clinical PK in early drug discovery, we built …

Cheminformatics and artificial intelligence for accelerating agrochemical discovery

Y Djoumbou-Feunang, J Wilmot, J Kinney… - Frontiers in …, 2023 - frontiersin.org
The global cost-benefit analysis of pesticide use during the last 30 years has been
characterized by a significant increase during the period from 1990 to 2007 followed by a …

Improving Dimensionality Reduction Projections for Data Visualization

B Rafieian, P Hermosilla, PP Vázquez - Applied Sciences, 2023 - mdpi.com
In data science and visualization, dimensionality reduction techniques have been
extensively employed for exploring large datasets. These techniques involve the …

Explaining compound activity predictions with a substructure-aware loss for graph neural networks

K Amara, R Rodríguez-Pérez… - Journal of …, 2023 - Springer
Explainable machine learning is increasingly used in drug discovery to help rationalize
compound property predictions. Feature attribution techniques are popular choices to …