Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Molecular mechanisms of adaptive evolution in wild animals and plants

Y Hu, X Wang, Y Xu, H Yang, Z Tong, R Tian… - Science China Life …, 2023 - Springer
Wild animals and plants have developed a variety of adaptive traits driven by adaptive
evolution, an important strategy for species survival and persistence. Uncovering the …

The promise and pitfalls of synteny in phylogenomics

JL Steenwyk, N King - PLoS Biology, 2024 - journals.plos.org
Reconstructing the tree of life remains a central goal in biology. Early methods, which relied
on small numbers of morphological or genetic characters, often yielded conflicting …

A plastid phylogenomic framework for the palm family (Arecaceae)

G Yao, YQ Zhang, C Barrett, B Xue, S Bellot, WJ Baker… - BMC biology, 2023 - Springer
Background Over the past decade, phylogenomics has greatly advanced our knowledge of
angiosperm evolution. However, phylogenomic studies of large angiosperm families with …

Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting

H Song, Y Wang, H Shao, Z Li, P Hu… - Proceedings of the …, 2023 - pnas.org
The almost simultaneous emergence of major animal phyla during the early Cambrian
shaped modern animal biodiversity. Reconstructing evolutionary relationships among such …

Phylogenomic discordance is driven by wide-spread introgression and incomplete lineage sorting during rapid species diversification within rattlesnakes (Viperidae …

EA Myers, RM Rautsaw, M Borja, J Jones… - Systematic …, 2024 - academic.oup.com
Abstract.—Phylogenomics allows us to uncover the historical signal of evolutionary
processes through time and estimate phylogenetic networks accounting for these signals …

Dysfunction of duplicated pair rice histone acetyltransferases causes segregation distortion and an interspecific reproductive barrier

B Liao, YH **ang, Y Li, KY Yang, JX Shan… - Nature …, 2024 - nature.com
Postzygotic reproductive isolation, which results in the irreversible divergence of species, is
commonly accompanied by hybrid sterility, necrosis/weakness, or lethality in the F1 or other …

Phylogenomics of mulberries (Morus, Moraceae) inferred from plastomes and single copy nuclear genes

M Wang, M Zhu, J Qian, Z Yang, F Shang… - Molecular Phylogenetics …, 2024 - Elsevier
Mulberries (genus Morus), belonging to the order Rosales, family Moraceae, are important
woody plants due to their economic values in sericulture, as well as for nutritional benefits …

Evolutionary radiation strategy revealed in the Scarabaeidae with evidence of continuous spatiotemporal morphology and phylogenesis

Y Tong, Y Lu, Z Tian, X Yang, M Bai - Communications Biology, 2024 - nature.com
Evolutionary biology faces the important challenge of determining how to interpret the
relationship between selection pressures and evolutionary radiation. The lack of …