[HTML][HTML] Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

GJ Narlikar, R Sundaramoorthy, T Owen-Hughes - Cell, 2013 - cell.com
Chromatin provides both a means to accommodate a large amount of genetic material in a
small space and a means to package the same genetic material in different chromatin states …

End resection at double-strand breaks: mechanism and regulation

LS Symington - Cold Spring Harbor perspectives in …, 2014 - cshperspectives.cshlp.org
RecA/Rad51 catalyzed pairing of homologous DNA strands, initiated by polymerization of
the recombinase on single-stranded DNA (ssDNA), is a universal feature of homologous …

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9

SH Sternberg, S Redding, M **ek, EC Greene… - Biophysical …, 2014 - cell.com
The CRISPR-associated enzyme Cas9 is an RNA-guided endonuclease that uses RNA:
DNA base-pairing to target and cleave foreign DNA as part of an adaptive immune system in …

Rapid movement and transcriptional re‐localization of human cohesin on DNA

IF Davidson, D Goetz, MP Zaczek, MI Molodtsov… - The EMBO …, 2016 - embopress.org
The spatial organization, correct expression, repair, and segregation of eukaryotic genomes
depend on cohesin, ring‐shaped protein complexes that are thought to function by …

Single-molecule imaging reveals a collapsed conformational state for DNA-bound cohesin

J Stigler, GÖ Çamdere, DE Koshland, EC Greene - Cell reports, 2016 - cell.com
Cohesin is essential for the hierarchical organization of the eukaryotic genome and plays
key roles in many aspects of chromosome biology. The conformation of cohesin bound to …

The impact of DNA intercalators on DNA and DNA-processing enzymes elucidated through force-dependent binding kinetics

AS Biebricher, I Heller, RFH Roijmans… - Nature …, 2015 - nature.com
DNA intercalators are widely used as fluorescent probes to visualize DNA and DNA
transactions in vivo and in vitro. It is well known that they perturb DNA structure and stability …

ParB spreading requires DNA bridging

TGW Graham, X Wang, D Song, CM Etson… - Genes & …, 2014 - genesdev.cshlp.org
The parABS system is a widely employed mechanism for plasmid partitioning and
chromosome segregation in bacteria. ParB binds to parS sites on plasmids and …

How RecBCD enzyme and Chi promote DNA break repair and recombination: a molecular biologist's view

GR Smith - Microbiology and Molecular Biology Reviews, 2012 - journals.asm.org
The repair of DNA double-strand breaks (DSBs) is essential for cell viability and important
for homologous genetic recombination. In enteric bacteria such as Escherichia coli, the …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical Reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

RPA phosphorylation inhibits DNA resection

MM Soniat, LR Myler, HC Kuo, TT Paull, IJ Finkelstein - Molecular cell, 2019 - cell.com
Genetic recombination in all kingdoms of life initiates when helicases and nucleases
process (resect) the free DNA ends to expose single-stranded DNA (ssDNA) overhangs …