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A transdisciplinary review of deep learning research and its relevance for water resources scientists
C Shen - Water Resources Research, 2018 - Wiley Online Library
Deep learning (DL), a new generation of artificial neural network research, has transformed
industries, daily lives, and various scientific disciplines in recent years. DL represents …
industries, daily lives, and various scientific disciplines in recent years. DL represents …
Co-expression networks for plant biology: why and how
X Rao, RA Dixon - Acta biochimica et biophysica Sinica, 2019 - academic.oup.com
Co-expression network analysis is one of the most powerful approaches for interpretation of
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …
Gene co-expression analysis for functional classification and gene–disease predictions
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …
biological processes, to prioritize candidate disease genes or to discern transcriptional …
[HTML][HTML] An unsupervised machine learning method for discovering patient clusters based on genetic signatures
Introduction Many chronic disorders have genomic etiology, disease progression, clinical
presentation, and response to treatment that vary on a patient-to-patient basis. Such …
presentation, and response to treatment that vary on a patient-to-patient basis. Such …
A systematic comparative evaluation of biclustering techniques
VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …
columns of a data matrix. These techniques became very popular for the analysis of gene …
[HTML][HTML] An unsupervised machine learning model for discovering latent infectious diseases using social media data
Introduction The authors of this work propose an unsupervised machine learning model that
has the ability to identify real-world latent infectious diseases by mining social media data. In …
has the ability to identify real-world latent infectious diseases by mining social media data. In …
Auto-weighted multi-view co-clustering with bipartite graphs
Co-clustering aims to explore coherent patterns by simultaneously clustering samples and
features of data. Several co-clustering methods have been proposed in the past decades …
features of data. Several co-clustering methods have been proposed in the past decades …
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer
Background Elucidation of regulatory networks, including identification of regulatory
mechanisms specific to a given biological context, is a key aim in systems biology. This has …
mechanisms specific to a given biological context, is a key aim in systems biology. This has …
Biclustering fMRI time series: a comparative study
Background The effectiveness of biclustering, simultaneous clustering of rows and columns
in a data matrix, was shown in gene expression data analysis. Several researchers …
in a data matrix, was shown in gene expression data analysis. Several researchers …