Priming and memory of stress responses in organisms lacking a nervous system
M Hilker, J Schwachtje, M Baier… - Biological …, 2016 - Wiley Online Library
Experience and memory of environmental stimuli that indicate future stress can prepare
(prime) organismic stress responses even in species lacking a nervous system. The process …
(prime) organismic stress responses even in species lacking a nervous system. The process …
Bacteria–surface interactions
The interaction of bacteria with surfaces has important implications in a range of areas,
including bioenergy, biofouling, biofilm formation, and the infection of plants and animals …
including bioenergy, biofouling, biofilm formation, and the infection of plants and animals …
Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states
P Ma, HM Amemiya, LL He, SJ Gandhi, R Nicol… - Cell, 2023 - cell.com
We introduce BacDrop, a highly scalable technology for bacterial single-cell RNA
sequencing that has overcome many challenges hindering the development of scRNA-seq …
sequencing that has overcome many challenges hindering the development of scRNA-seq …
ATP-Dependent Persister Formation in Escherichia coli
Y Shan, A Brown Gandt, SE Rowe, JP Deisinger… - MBio, 2017 - Am Soc Microbiol
Persisters are a subpopulation of antibiotic-tolerant cells responsible for the recalcitrance of
chronic infections. Our current understanding of persister formation is primarily based on …
chronic infections. Our current understanding of persister formation is primarily based on …
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
Microscopy image analysis is a major bottleneck in quantification of single-cell microscopy
data, typically requiring human oversight and curation, which limit both accuracy and …
data, typically requiring human oversight and curation, which limit both accuracy and …
Coordination of microbial metabolism
Beyond fuelling cellular activities with building blocks and energy, metabolism also
integrates environmental conditions into intracellular signals. The underlying regulatory …
integrates environmental conditions into intracellular signals. The underlying regulatory …
Identifying and visualizing functional PAM diversity across CRISPR-Cas systems
RT Leenay, KR Maksimchuk, RA Slotkowski… - Molecular cell, 2016 - cell.com
CRISPR-Cas adaptive immune systems in prokaryotes boast a diversity of protein families
and mechanisms of action, where most systems rely on protospacer-adjacent motifs (PAMs) …
and mechanisms of action, where most systems rely on protospacer-adjacent motifs (PAMs) …
Engineering dynamic pathway regulation using stress-response promoters
Heterologous pathways used in metabolic engineering may produce intermediates toxic to
the cell. Dynamic control of pathway enzymes could prevent the accumulation of these …
the cell. Dynamic control of pathway enzymes could prevent the accumulation of these …
Genomic analysis of a key innovation in an experimental Escherichia coli population
Evolutionary novelties have been important in the history of life, but their origins are usually
difficult to examine in detail. We previously described the evolution of a novel trait, aerobic …
difficult to examine in detail. We previously described the evolution of a novel trait, aerobic …
Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space
Biological systems that perform multiple tasks face a fundamental trade-off: A given
phenotype cannot be optimal at all tasks. Here we ask how trade-offs affect the range of …
phenotype cannot be optimal at all tasks. Here we ask how trade-offs affect the range of …