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Cellular signaling pathways as plastic, proto-cognitive systems: Implications for biomedicine
Many aspects of health and disease are modeled using the abstraction of a" pathway"—a
set of protein or other subcellular activities with specified functional linkages between them …
set of protein or other subcellular activities with specified functional linkages between them …
Behavior-related gene regulatory networks: A new level of organization in the brain
Neuronal networks are the standard heuristic model today for describing brain activity
associated with animal behavior. Recent studies have revealed an extensive role for a …
associated with animal behavior. Recent studies have revealed an extensive role for a …
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
Metabolic reprogramming is a general feature of cancer cells. Regrettably, the
comprehensive quantification of metabolites in biological specimens does not promptly …
comprehensive quantification of metabolites in biological specimens does not promptly …
Dynamical criticality in gene regulatory networks
A well‐known hypothesis, with far‐reaching implications, is that biological evolution should
preferentially lead to states that are dynamically critical. In previous papers, we showed that …
preferentially lead to states that are dynamically critical. In previous papers, we showed that …
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
Colon rectal cancers (CRC) are the result of sequences of mutations which lead the
intestinal tissue to develop in a carcinoma following a “progression” of observable …
intestinal tissue to develop in a carcinoma following a “progression” of observable …
Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches
Angiogenesis plays a key role in tumor growth and cancer progression. TIE-2-expressing
monocytes (TEM) have been reported to critically account for tumor vascularization and …
monocytes (TEM) have been reported to critically account for tumor vascularization and …
Integration of Boolean models exemplified on hepatocyte signal transduction
R Schlatter, N Philippi, G Wangorsch… - Briefings in …, 2012 - academic.oup.com
The number of mathematical models for biological pathways is rapidly growing. In particular,
Boolean modelling proved to be suited to describe large cellular signalling networks …
Boolean modelling proved to be suited to describe large cellular signalling networks …
Some control and observation issues in cellular automata
This review article focuses on studying problems of observability and controllability of
cellular automata (CAs) considered in the context of control theory, an important feature of …
cellular automata (CAs) considered in the context of control theory, an important feature of …
Investigating the relation between stochastic differentiation, homeostasis and clonal expansion in intestinal crypts via multiscale modeling
Colorectal tumors originate and develop within intestinal crypts. Even though some of the
essential phenomena that characterize crypt structure and dynamics have been effectively …
essential phenomena that characterize crypt structure and dynamics have been effectively …
Control of cellular automata
We study the problem of master-slave synchronization and control of totalistic cellular
automata. The synchronization mechanism is that of setting a fraction of sites of the slave …
automata. The synchronization mechanism is that of setting a fraction of sites of the slave …