[HTML][HTML] AlphaFold and implications for intrinsically disordered proteins

KM Ruff, RV Pappu - Journal of molecular biology, 2021 - Elsevier
Accurate predictions of the three-dimensional structures of proteins from their amino acid
sequences have come of age. AlphaFold, a deep learning-based approach to protein …

Intrinsically disordered proteins and their “mysterious”(meta) physics

VN Uversky - Frontiers in Physics, 2019 - frontiersin.org
Recognition of the natural abundance and functional importance of intrinsically disordered
proteins (IDPs), and protein hybrids that contain both intrinsically disordered protein regions …

A new phase of networking: the molecular composition and regulatory dynamics of mammalian stress granules

SR Millar, JQ Huang, KJ Schreiber, YC Tsai… - Chemical …, 2023 - ACS Publications
Stress granules (SGs) are cytosolic biomolecular condensates that form in response to
cellular stress. Weak, multivalent interactions between their protein and RNA constituents …

Liquid–liquid phase separation as an organizing principle of intracellular space: Overview of the evolution of the cell compartmentalization concept

IA Antifeeva, AV Fonin, AS Fefilova… - Cellular and Molecular …, 2022 - Springer
At the turn of the twenty-first century, fundamental changes took place in the understanding
of the structure and function of proteins and then in the appreciation of the intracellular …

Direct observation of the three regions in α-synuclein that determine its membrane-bound behaviour

G Fusco, A De Simone, T Gopinath, V Vostrikov… - Nature …, 2014 - nature.com
Abstract α-synuclein (αS) is a protein involved in neurotransmitter release in presynaptic
terminals, and whose aberrant aggregation is associated with Parkinson's disease. In …

Unusual biophysics of intrinsically disordered proteins

VN Uversky - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2013 - Elsevier
Research of a past decade and a half leaves no doubt that complete understanding of
protein functionality requires close consideration of the fact that many functional proteins do …

A decade and a half of protein intrinsic disorder: biology still waits for physics

VN Uversky - Protein Science, 2013 - Wiley Online Library
The abundant existence of proteins and regions that possess specific functions without
being uniquely folded into unique 3D structures has become accepted by a significant …

Intrinsically disordered proteins play diverse roles in cell signaling

SE Bondos, AK Dunker, VN Uversky - Cell Communication and Signaling, 2022 - Springer
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …

Protein intrinsic disorder-based liquid–liquid phase transitions in biological systems: Complex coacervates and membrane-less organelles

VN Uversky - Advances in colloid and interface science, 2017 - Elsevier
It is clear now that eukaryotic cells contain numerous membrane-less organelles, many of
which are formed in response to changes in the cellular environment. Being typically liquid …

Intrinsically disordered proteome of human membrane‐less organelles

AL Darling, Y Liu, CJ Oldfield, VN Uversky - Proteomics, 2018 - Wiley Online Library
It is recognized now that various proteinaceous membrane‐less organelles (PMLOs) are
commonly found in cytoplasm, nucleus, and mitochondria of various eukaryotic cells (as well …