[HTML][HTML] Proteomes are of proteoforms: embracing the complexity

K Carbonara, M Andonovski, JR Coorssen - Proteomes, 2021 - mdpi.com
Proteomes are complex—much more so than genomes or transcriptomes. Thus, simplifying
their analysis does not simplify the issue. Proteomes are of proteoforms, not canonical …

Advancing the sensitivity of selected reaction monitoring‐based targeted quantitative proteomics

T Shi, D Su, T Liu, K Tang, DG Camp, WJ Qian… - …, 2012 - Wiley Online Library
Selected reaction monitoring (SRM)–also known as multiple reaction monitoring (MRM)–has
emerged as a promising high‐throughput targeted protein quantification technology for …

Personalized proteomics: the future of precision medicine

TT Duarte, CT Spencer - Proteomes, 2016 - mdpi.com
Medical diagnostics and treatment has advanced from a one size fits all science to treatment
of the patient as a unique individual. Currently, this is limited solely to genetic analysis …

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

JJ Kennedy, SE Abbatiello, K Kim, P Yan… - Nature …, 2014 - nature.com
Multiple reaction monitoring (MRM) mass spectrometry has been successfully applied to
monitor targeted proteins in biological specimens, raising the possibility that assays could …

FLEXITau: Quantifying Post-translational Modifications of Tau Protein in Vitro and in Human Disease

W Mair, J Muntel, K Tepper, S Tang, J Biernat… - Analytical …, 2016 - ACS Publications
Tauopathies, including Alzheimer's disease (AD), are associated with the aggregation of
modified microtubule associated protein tau. This pathological state of tau is often referred to …

Proteomic analysis of synovial fluid from the osteoarthritic knee: comparison with transcriptome analyses of joint tissues

SY Ritter, R Subbaiah, G Bebek, J Crish… - Arthritis & …, 2013 - Wiley Online Library
Objective The pathophysiology of the most common joint disease, osteoarthritis (OA),
remains poorly understood. Since synovial fluid (SF) bathes joint cartilage and synovium, we …

Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in …

B Krastins, A Prakash, DA Sarracino, D Nedelkov… - Clinical …, 2013 - Elsevier
OBJECTIVES: The aim of this study was to develop high-throughput, quantitative and highly
selective mass spectrometric, targeted immunoassays for clinically important proteins in …

Total ApoE and ApoE4 isoform assays in an Alzheimer's disease case-control study by targeted mass spectrometry (n= 669): a pilot assay for methionine-containing …

R Simon, M Girod, C Fonbonne, A Salvador… - Molecular & Cellular …, 2012 - ASBMB
Allelic polymorphism of the apolipoprotein E (ApoE) gene (ApoE ε2, ApoE ε3 and ApoE ε4
alleles) gives rise to three protein isoforms (ApoE2, ApoE3 and ApoE4) that differ by 1 or 2 …

Toward an integrated pipeline for protein biomarker development

AP Drabovich, E Martínez-Morillo… - Biochimica et Biophysica …, 2015 - Elsevier
Protein biomarker development is a multidisciplinary task involving basic, translational and
clinical research. Integration of multidisciplinary efforts in a single pipeline is challenging …

Redefining serological diagnostics with immunoaffinity proteomics

J Walter, Z Eludin, AP Drabovich - Clinical Proteomics, 2023 - Springer
Serological diagnostics is generally defined as the detection of specific human
immunoglobulins developed against viral, bacterial, or parasitic diseases. Serological tests …