A review of in silico approaches for analysis and prediction of HIV-1-human protein–protein interactions

S Bandyopadhyay, S Ray… - Briefings in …, 2015 - academic.oup.com
The computational or in silico approaches for analysing the HIV-1-human protein–protein
interaction (PPI) network, predicting different host cellular factors and PPIs and discovering …

Semi-supervised consensus clustering based on closed patterns

T Yang, N Pasquier, F Precioso - Knowledge-Based Systems, 2022 - Elsevier
Semi-supervised consensus clustering, also called semi-supervised ensemble clustering, is
a recently emerged technique that integrates prior knowledge into consensus clustering in …

Recognition of co-existence pattern of salt marshes and mangroves for littoral forest restoration

M Ghosh, KC Mondal, A Roy - Ecological Informatics, 2022 - Elsevier
Climate-change driven sea level rise causes a increase in salinity in coastal wetlands
accelerating the alteration of the species composition. It triggers the gradual extinction of …

Biclustering‐based association rule mining approach for predicting cancer‐associated protein interactions

L Dey, A Mukhopadhyay - IET Systems Biology, 2019 - Wiley Online Library
Protein–protein interactions (PPIs) have been widely used to understand different biological
processes and cellular functions associated with several diseases like cancer. Although …

A new FCA-based method for identifying biclusters in gene expression data

A Houari, W Ayadi, S Ben Yahia - International Journal of Machine …, 2018 - Springer
Biclustering has been very relevant within the field of gene expression data analysis. In fact,
its main thrust stands in its ability to identify groups of genes that behave in the same way …

Frequent itemset mining using FP-tree: a CLA-based approach and its extended application in biodiversity data

M Ghosh, A Roy, P Sil, KC Mondal - Innovations in Systems and Software …, 2023 - Springer
The efficient discovery of frequent itemsets from a transaction database is the fundamental
step for association rule mining in data analytics. Interesting associations among the items …

A novel fuzzy rule extraction approach using Gaussian kernel-based granular computing

G Dai, Y Hu, Y Yang, N Zhang, A Abraham… - … and Information Systems, 2019 - Springer
In this paper, we present a novel fuzzy rule extraction approach by employing the Gaussian
kernels and fuzzy concept lattices. First we introduce the Gaussian kernel to interval type-2 …

Mining negative correlation biclusters from gene expression data using generic association rules

A Houari, W Ayadi, SB Yahia - Procedia computer science, 2017 - Elsevier
A majority of existing biclustering algorithms for microarrays data focus only on extracting
biclusters with positive correlations of genes. Nevertheless, biological studies show that a …

NBF: an fca-based algorithm to identify negative correlation biclusters of DNA microarray data

A Houari, W Ayadi, SB Yahia - 2018 IEEE 32nd International …, 2018 - ieeexplore.ieee.org
Biclustering is a popular technique to study gene expression data, especially to identify
functionally related groups of genes under subsets of conditions. Nevertheless, most of the …

Algorithms for data mining and bio-informatics

KC Mondal - 2013 - hal.science
Pattern extraction is one of the major topics in the Knowledge Discovery from Data (KDD)
and Background Knowledge Integration (BKI) research domains. Extracting patterns from …